Stephen Nayfach
Molecular Biology · 2016–2023
A researcher in the Science corpus: 9 papers; trusts 3 researchers and is trusted by 2 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 300 citations into it; #13,793 of 17,773 by trust here, #6,817 by citations
- Computational Biology & Bioinformatics — 30 citations into it
- Cellular and Molecular Neuroscience — 6 citations into it
Whom Stephen Nayfach trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Sean R. Eddy
- Donovan H. Parks
- Rasko Leinonen
- Stephen F. Altschul
- Ying Chen
- Guy Cochrane
- Yaniv Loewenstein
- Ivica Letunic
- Heng Li
- Shinichi Sunagawa
Who trusts Stephen Nayfach overall
- Tom O. Delmont
- Simon Roux
- Duy Tin Truong
- Aitor Blanco-Míguez
- Adrian Tett
- A. M. Eren
- F. Beghini
- Robert C. Edgar
- Edoardo Pasolli
Papers from Stephen Nayfach's perspective
Ordered by how strongly the researchers Stephen Nayfach trusts endorse each paper. Same corpus, a different order for every researcher.
- Basic local alignment search tool.
- The COG database: a tool for genome-scale analysis of protein functions and evolution
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) (Nucleic Acids Res.)
- Accelerated Profile HMM Searches
- High-throughput generation, optimization and analysis of genome-scale metabolic models (Nature Biotechnology)
- A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea (Nature)
- ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments (Nucleic Acids Res.)
- The Pfam protein families database
Their papers
- New insights from uncultivated genomes of the global human gut microbiome (2019) — 616 citations
- A genomic catalog of Earth’s microbiomes (2020) — 743 citations
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography (2016) — 416 citations
- A unified catalog of 204,938 reference genomes from the human gut microbiome (2020) — 1,109 citations
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes (2020) — 1,593 citations
- Identification of mobile genetic elements with geNomad (2023) — 813 citations
- iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria (2023) — 364 citations
- IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata (2022) — 378 citations
- IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses (2020) — 296 citations