Simon Roux
Molecular Biology · 2015–2023
A researcher in the Science corpus: 15 papers; trusts 3 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 308 citations into it
- Cellular and Molecular Neuroscience — 8 citations into it
Whom Simon Roux trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Robert C. Edgar
- Christiam Camacho
- Donovan H. Parks
- Stephen Nayfach
- Sean R. Eddy
- M. Olm
- Brian D. Ondov
- I-Min A. Chen
- Robert A. Edwards
- C. Suttle
Who trusts Simon Roux overall
Papers from Simon Roux's perspective
Ordered by how strongly the researchers Simon Roux trusts endorse each paper. Same corpus, a different order for every researcher.
- Community structure and metabolism through reconstruction of microbial genomes from the environment (Nature)
- Fast gapped-read alignment with Bowtie 2
- Genomic insights that advance the species definition for prokaryotes. (Proceedings of the National Academy of Sciences of the United States of America)
- The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) (Nucleic Acids Res.)
- A genomic catalog of Earth’s microbiomes (Nature Biotechnology)
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- The COG database: a tool for genome-scale analysis of protein functions and evolution
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- KEGG: Kyoto Encyclopedia of Genes and Genomes (Nucleic Acids Res.)
- Interactive Tree Of Life (iTOL) v4: recent updates and new developments (Nucleic Acids Res.)
Their papers
- VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses (2021) — 1,124 citations
- A genomic catalog of Earth’s microbiomes (2020) — 743 citations
- CheckV assesses the quality and completeness of metagenome-assembled viral genomes (2020) — 1,593 citations
- Plankton networks driving carbon export in the oligotrophic ocean (2016) — 751 citations
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks (2019) — 825 citations
- iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria (2023) — 364 citations
- IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata (2022) — 378 citations
- The IMG/M data management and analysis system v.7: content updates and new features (2022) — 316 citations
- The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities (2020) — 388 citations
- IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses (2020) — 296 citations
- DRAM for distilling microbial metabolism to automate the curation of microbiome function (2020) — 939 citations
- Marine DNA viral macro- and micro-diversity from pole to pole (2019) — 703 citations
- Minimum Information about an Uncultivated Virus Genome (MIUViG) (2018) — 644 citations
- Determinants of community structure in the global plankton interactome (2015) — 901 citations
- Patterns and ecological drivers of ocean viral communities (2015) — 679 citations