Mihaela Pertea
Molecular Biology · 2001–2021
A researcher in the Science corpus: 16 papers; trusts 15 researchers and is trusted by 14 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 151 citations into it; #3,435 of 17,773 by trust here, #1,460 by citations
- Plant Science — 31 citations into it
- Genetics — 24 citations into it
- Artificial Intelligence — 7 citations into it
Whom Mihaela Pertea trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ben Langmead
- Daehwan Kim
- Steven L. Salzberg
- Cole Trapnell
- Bo Li
- Thomas D. Wu
- Paolo Ferragina
- Geo Pertea
- Mark D. Robinson
- Simon Anders
Who trusts Mihaela Pertea overall
- Computational Pan-Genomics Consortium
- Alaina Shumate
- Jens Keilwagen
- Abhishek Niroula
- Xueqiu Jian
- William H. Majoros
- Geng Chen
- Brandon Wong
- F. Hartung
- Christopher J. Grassa
Papers from Mihaela Pertea's perspective
Ordered by how strongly the researchers Mihaela Pertea trusts endorse each paper. Same corpus, a different order for every researcher.
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
- BLAT--the BLAST-like alignment tool. (Genome Research)
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data (Bioinform.)
- Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
- NCBI Reference Sequences: current status, policy and new initiatives (Nucleic Acids Res.)
- Analysis and design of RNA sequencing experiments for identifying isoform regulation (Nature Methods)
- Alternative Isoform Regulation in Human Tissue Transcriptomes (Nature)
- Biases in Illumina transcriptome sequencing caused by random hexamer priming (Nucleic Acids Research)
- Opportunistic data structures with applications
Their papers
- The ENCODE (ENCyclopedia Of DNA Elements) Project (2004) — 2,411 citations
- TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders (2004) — 1,755 citations
- Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii (2002) — 726 citations
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads (2015) — 11,722 citations
- GeneSplicer: a new computational method for splice site prediction. (2001) — 651 citations
- Genome sequence of the human malaria parasite Plasmodium falciparum (2002) — 4,455 citations
- Transcriptome assembly from long-read RNA-seq alignments with StringTie2 (2019) — 1,681 citations
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments (2007) — 3,430 citations
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie, and Ballgown (2016) — 5,669 citations
- GFF Utilities: GffRead and GffCompare (2020) — 1,483 citations
- The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans (2005) — 733 citations
- Improved transcriptome assembly using a hybrid of long and short reads with StringTie (2021) — 385 citations
- The genome of the blood fluke Schistosoma mansoni (2009) — 1,033 citations
- Draft Genome of the Filarial Nematode Parasite Brugia malayi (2007) — 661 citations
- Draft Genome Sequence of the Sexually Transmitted Pathogen Trichomonas vaginalis (2007) — 806 citations
- Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus (2005) — 1,399 citations