Daehwan Kim
Molecular Biology · Nature Protocols · 2011–2019
A researcher in the Science corpus: 7 papers; trusts 21 researchers and is trusted by 39 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 119 citations into it; #1,048 of 17,773 by trust here, #1,075 by citations
- Genetics — 25 citations into it
- Artificial Intelligence — 23 citations into it; #14,343 of 35,345 by trust here, #16,166 by citations
- Ecology — 7 citations into it
- Algorithms & Complexity — 5 citations into it
- Computer Networks and Communications — 5 citations into it
Whom Daehwan Kim trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ben Langmead
- Steven L. Salzberg
- W. James Kent
- Heng Li
- Paolo Ferragina
- Thomas D. Wu
- Cole Trapnell
- Ali Mortazavi
- Derrick E. Wood
- Guillaume Marçais
Who trusts Daehwan Kim overall
- Daniel C. Koboldt
- Brian J. Haas
- Xiao-Ou Zhang
- Mihaela Pertea
- Mingfu Shao
- Steven L. Salzberg
- M. Mahmoud
- Todd J. Treangen
- Daniel E. Deatherage
- Ben Langmead
Papers from Daehwan Kim's perspective
Ordered by how strongly the researchers Daehwan Kim trusts endorse each paper. Same corpus, a different order for every researcher.
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Genome-Wide Mapping of in Vivo Protein-DNA Interactions (Science)
- Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry (Nature)
- RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (Genome Research)
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing (Science)
- Opportunistic data structures with applications
- A Greedy Algorithm for Aligning DNA Sequences (J. Comput. Biol.)
Their papers
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (2012) — 11,804 citations
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions (2013) — 12,186 citations
- HISAT: a fast spliced aligner with low memory requirements (2015) — 20,246 citations
- Centrifuge: rapid and sensitive classification of metagenomic sequences (2016) — 1,262 citations
- TopHat-Fusion: an algorithm for discovery of novel fusion transcripts (2011) — 785 citations
- Graph-Based Genome Alignment and Genotyping with HISAT2 and HISAT-genotype (2019) — 12,086 citations
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie, and Ballgown (2016) — 5,669 citations