Geo Pertea
Molecular Biology · 2000–2021
A researcher in the Science corpus: 13 papers; trusts 16 researchers and is trusted by 13 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 153 citations into it; #3,717 of 17,773 by trust here, #962 by citations
- Genetics — 22 citations into it
- Artificial Intelligence — 16 citations into it
- Plant Science — 13 citations into it
Whom Geo Pertea trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Ben Langmead
- Daehwan Kim
- Heng Li
- Steven L. Salzberg
- Thomas D. Wu
- Cole Trapnell
- Mihaela Pertea
- Zheng Zhang
- Bo Li
- Serban Nacu
Who trusts Geo Pertea overall
- Alaina Shumate
- Jens Keilwagen
- Mihaela Pertea
- Brandon Wong
- Geng Chen
- N. Davidson
- M. Wühr
- Xiao-Ou Zhang
- Maria Greco
- Computational Pan-Genomics Consortium
Papers from Geo Pertea's perspective
Ordered by how strongly the researchers Geo Pertea trusts endorse each paper. Same corpus, a different order for every researcher.
- BLAT--the BLAST-like alignment tool. (Genome Research)
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing (Science)
- RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (Genome Research)
- The Sequence Alignment/Map format and SAMtools (Bioinform.)
- Spontaneous mapping of number and space in adults and young children (Cognition)
- Genome-Wide Mapping of in Vivo Protein-DNA Interactions (Science)
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data (Bioinform.)
- Improving RNA-Seq expression estimates by correcting for fragment bias (Genome Biology)
- Opportunistic data structures with applications
Their papers
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks (2012) — 11,804 citations
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions (2013) — 12,186 citations
- Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs (2002) — 1,597 citations
- The TIGR Gene Indices: reconstruction and representation of expressed gene sequences (2000) — 362 citations
- TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets (2003) — 1,808 citations
- StringTie enables improved reconstruction of a transcriptome from RNA-seq reads (2015) — 11,722 citations
- The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species (2001) — 506 citations
- Transcriptome assembly from long-read RNA-seq alignments with StringTie2 (2019) — 1,681 citations
- Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie, and Ballgown (2016) — 5,669 citations
- GFF Utilities: GffRead and GffCompare (2020) — 1,483 citations
- Improved transcriptome assembly using a hybrid of long and short reads with StringTie (2021) — 385 citations
- Quality score compression improves genotyping accuracy (2015) — 563 citations
- A whole-genome assembly of the domestic cow, Bos taurus (2009) — 1,125 citations