Siewert-Jan Marrink

Molecular Biology · 2000–2021

A researcher in the Science corpus: 19 papers; trusts 21 researchers and is trusted by 10 researchers here, as inferred from the citation graph.

Subfields

Molecular Biology — 233 citations into it; #3,923 of 17,773 by trust here, #2,408 by citations
Atomic and Molecular Physics, and Optics — 85 citations into it; #5,744 of 7,135 by trust here, #1,069 by citations
Materials Chemistry — 72 citations into it
Condensed Matter Physics — 20 citations into it
Biomedical Engineering — 15 citations into it; #4,585 of 10,734 by trust here, #5,297 by citations

Whom Siewert-Jan Marrink trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

Who trusts Siewert-Jan Marrink overall

Papers from Siewert-Jan Marrink's perspective

Ordered by how strongly the researchers Siewert-Jan Marrink trusts endorse each paper. Same corpus, a different order for every researcher.

A multiscale coarse-graining method for biomolecular systems. (Journal of Physical Chemistry B)
Lipid Rafts As a Membrane-Organizing Principle (Science)
The mystery of membrane organization: composition, regulation and physiological relevance of lipid rafts (Nature reviews. Molecular cell biology)
Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation
Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
Determining the shear viscosity of model liquids from molecular dynamics simulations
A new force field for simulating phosphatidylcholine bilayers (Journal of Computational Chemistry)
AWSEM-MD: Protein Structure Prediction Using Coarse-grained Physical Potentials and Bioinformatically Based Local Structure Biasing
Water modeled as an intermediate element between carbon and silicon. (Journal of Physical Chemistry B)
Coarse-Graining of Condensed Phase and Biomolecular Systems

Their papers

The MARTINI force field: coarse grained model for biomolecular simulations. (2007) — 5,170 citations
The MARTINI Coarse-Grained Force Field: Extension to Proteins. (2008) — 2,367 citations
The power of coarse graining in biomolecular simulations (2013) — 542 citations
Perspective on the Martini model. (2013) — 1,089 citations
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations. (2015) — 1,062 citations
Lipid organization of the plasma membrane. (2014) — 827 citations
Improved Parameters for the Martini Coarse-Grained Protein Force Field. (2013) — 1,353 citations
Polarizable Water Model for the Coarse-Grained MARTINI Force Field (2010) — 831 citations
Martini 3: A General Purpose Force Field for Coarse-Grained Molecular Dynamics (2021) — 1,229 citations
Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models. (2014) — 662 citations
Emerging Diversity in Lipid–Protein Interactions (2019) — 389 citations
Computational Modeling of Realistic Cell Membranes (2019) — 579 citations
Martini straight: Boosting performance using a shorter cutoff and GPUs (2016) — 399 citations
CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field. (2015) — 442 citations
Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition. (2009) — 669 citations
Coarse grained model for semiquantitative lipid simulations (2004) — 2,034 citations
Methodological issues in lipid bilayer simulations (2003) — 329 citations
Effect of Undulations on Surface Tension in Simulated Bilayers (2001) — 225 citations
Molecular dynamics simulation of the kinetics of spontaneous micelle formation (2000) — 254 citations