Coarse grained model for semiquantitative lipid simulations
By Siewert-Jan Marrink, A. H. D. Vries, Alan E. Mark. 2004
2,034 citations recorded by the source corpus.
View Paper: https://www.semanticscholar.org/paper/d16ac2c874f67f56e1b5adbef834fcb080d102ec
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Citations in the corpus
- Mechanics of membrane fusion (2008, background): “Models developed with a simulation approach require further sophistication, as they use direct-interaction forces between the coarse grains representing groups of atom”
- Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants (2007, background): “developed a CG model that treats a wide variety of lipids based on an extension of the bead-spring model with a LJ12–6 function for all non-bonded interactions and a single value of σ [ 7 ].”
- Biological and synthetic membranes: What can be learned from a coarse-grained description? (2006, background): “Marrink and Mark observe two pathways: the classical hemifusion mechanism (pathway I) and the stalk-hole mechanism, with an elongated stalk (pathway II).”
- Computational modeling of membrane proteins (2014, methodology): “209 Several commonly used force fields were developed over the years and their accuracy was tested and compared with experimental data.”
- Polarizable Water Model for the Coarse-Grained MARTINI Force Field (2010, methodology): “The effective time accounts for the speed-up in coarse-grained dynamics (see [4]) and equals four times the actual simulation time.”
- Martini straight: Boosting performance using a shorter cutoff and GPUs (2016, methodology): “To reduce the effect of relatively short cutoffs, the Martini model [7,8] has been parameterized with the use of shifted functions for the non-bonded potentials.”