Todd Z. DeSantis
Molecular Biology · 2006–2023
A researcher in the Science corpus: 18 papers; trusts 16 researchers and is trusted by 37 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 183 citations into it; #1,041 of 17,773 by trust here, #199 by citations
- Ecology — 100 citations into it; #465 of 10,717 by trust here, #106 by citations
- Food Science — 18 citations into it
- Computational Biology & Bioinformatics — 10 citations into it
- Algorithms & Complexity — 6 citations into it
Whom Todd Z. DeSantis trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Philip Hugenholtz
- James R. Cole
- Sudhir Kumar
- Julie Dawn Thompson
- Stephen F. Altschul
- Patrick D. Schloss
- Wolfgang Ludwig
- Qiong Wang
- Koichiro Tamura
- Catherine A. Lozupone
Who trusts Todd Z. DeSantis overall
- C. Lauber
- Patrick D. Schloss
- Micah Hamady
- Noah Fierer
- Rob Knight
- J. Gregory Caporaso
- Robert C. Edgar
- Morgan N. Price
- Zongzhi Z. Liu
- K. N. Burns
Papers from Todd Z. DeSantis's perspective
Ordered by how strongly the researchers Todd Z. DeSantis trusts endorse each paper. Same corpus, a different order for every researcher.
- ARB: a software environment for sequence data. (Nucleic Acids Research)
- CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
- Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness (Applied and Environmental Microbiology)
- Microbial diversity in the deep sea and the underexplored “rare biosphere” (Proceedings of the National Academy of Sciences of the United States of America)
- At Least 1 in 20 16S rRNA Sequence Records Currently Held in Public Repositories Is Estimated To Contain Substantial Anomalies (Applied and Environmental Microbiology)
- The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis (Nucleic Acids Res.)
- UniFrac: a New Phylogenetic Method for Comparing Microbial Communities (Applied and Environmental Microbiology)
- SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB (Nucleic Acids Research)
- The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers (Nucleic Acids Research)
Their papers
- Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB (2006) — 4,718 citations
- NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes (2006) — 1,061 citations
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers (2008) — 584 citations
- Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. (2011) — 3,331 citations
- An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea (2011) — 4,740 citations
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) — 745 citations
- PyNAST: a flexible tool for aligning sequences to a template alignment (2009) — 3,469 citations
- Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys (2011) — 578 citations
- A framework for human microbiome research (2012) — 2,418 citations
- Structure, Function and Diversity of the Healthy Human Microbiome (2012) — 10,771 citations
- Airway Microbiota and Bronchial Hyperresponsiveness in Patients with Sub-optimally Controlled Asthma (2010) — 683 citations
- Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria (2011) — 2,429 citations
- Expansion of urease- and uricase-containing, indole- and p-cresol-forming and contraction of short chain fatty acid-producing intestinal microbiota in ESRD (2014) — 607 citations
- Chronic kidney disease alters intestinal microbial flora. (2013) — 1,052 citations
- Greengenes2 unifies microbial data in a single reference tree (2023) — 563 citations
- Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria (2010) — 1,204 citations
- Urban aerosols harbor diverse and dynamic bacterial populations (2007) — 658 citations
- Greengenes: Chimera-checked 16S rRNA gene database and workbench compatible in ARB (2006) — 5,325 citations