Daniel McDonald

Molecular Biology · 2010–2023

A researcher in the Science corpus: 25 papers; trusts 14 researchers and is trusted by 8 researchers here, as inferred from the citation graph.

Subfields

Molecular Biology — 481 citations into it; #5,170 of 17,773 by trust here, #88 by citations
Ecology — 184 citations into it; #4,898 of 10,717 by trust here, #37 by citations
Genetics — 64 citations into it; #5,710 of 6,854 by trust here, #731 by citations
Nature and Landscape Conservation — 23 citations into it

Whom Daniel McDonald trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

Who trusts Daniel McDonald overall

Papers from Daniel McDonald's perspective

Ordered by how strongly the researchers Daniel McDonald trusts endorse each paper. Same corpus, a different order for every researcher.

ARB: a software environment for sequence data. (Nucleic Acids Research)
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB (Applied and Environmental Microbiology)
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities (Applied and Environmental Microbiology)
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB (Nucleic Acids Research)
Introducing DOTUR, a Computer Program for Defining Operational Taxonomic Units and Estimating Species Richness (Applied and Environmental Microbiology)
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments (PLoS ONE)
A core gut microbiome in obese and lean twins (Nature)
QIIME allows analysis of high-throughput community sequencing data (Nature Methods)
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers (Nucleic Acids Research)
Short pyrosequencing reads suffice for accurate microbial community analysis (Nucleic Acids Research)

Their papers

QIIME allows analysis of high-throughput community sequencing data (2010) — 32,656 citations
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea (2011) — 4,740 citations
Forensic identification using skin bacterial communities (2010) — 662 citations
A framework for human microbiome research (2012) — 2,418 citations
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences (2013) — 8,259 citations
Structure, Function and Diversity of the Healthy Human Microbiome (2012) — 10,771 citations
The treatment-naive microbiome in new-onset Crohn's disease. (2014) — 2,964 citations
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome (2012) — 774 citations
Strains, functions, and dynamics in the expanded Human Microbiome Project (2017) — 1,132 citations
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (2019) — 19,259 citations
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns (2017) — 1,578 citations
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information (2018) — 447 citations
Best practices for analysing microbiomes (2018) — 1,565 citations
Qiita: rapid, web-enabled microbiome meta-analysis (2018) — 578 citations
American Gut: an Open Platform for Citizen Science Microbiome Research (2018) — 775 citations
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science (2018) — 1,189 citations
From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome (2012) — 97 citations
Dynamics of the human gut microbiome in Inflammatory Bowel Disease (2017) — 1,060 citations
Regional variation limits applications of healthy gut microbiome reference ranges and disease models (2018) — 756 citations
Greengenes2 unifies microbial data in a single reference tree (2023) — 563 citations