Chaok Seok

Molecular Biology · 2004–2022

A researcher in the Science corpus: 22 papers; trusts 57 researchers and is trusted by 23 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 339 citations into it; #1,842 of 17,773 by trust here, #3,165 by citations
• Materials Chemistry — 201 citations into it; #1,263 of 11,513 by trust here, #3,619 by citations
• Computational Biology & Bioinformatics — 110 citations into it
• Computational Theory and Mathematics — 86 citations into it; #5,568 of 12,182 by trust here, #1,633 by citations
• Spectroscopy — 24 citations into it; #810 of 1,674 by trust here, #625 by citations
• Computational Chemistry & Drug Discovery — 21 citations into it
• Evaluation & Benchmarks — 15 citations into it
• 3D Vision & Pose — 5 citations into it

Whom Chaok Seok trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Valerio Mariani
2. Andriy Kryshtafovych
3. Adam T. Zemla
4. Hahnbeom Park
5. Yang Zhang
6. András Fiser
7. Andrej Sali
8. Adrian A. Canutescu
9. Matthew P. Jacobson
10. Johannes Söding

Who trusts Chaok Seok overall

1. Hahnbeom Park
2. Lim Heo
3. Daniel J. Mandell
4. Gyu Rie Lee
5. Michael Feig
6. Tanja Kortemme
7. Hasup Lee
8. Ben M. Webb
9. Brian D. Weitzner
10. Debswapna Bhattacharya

Papers from Chaok Seok's perspective

Ordered by how strongly the researchers Chaok Seok trusts endorse each paper. Same corpus, a different order for every researcher.

1. TM-align: a protein structure alignment algorithm based on the TM-score
2. Basic local alignment search tool.
3. Announcing the worldwide Protein Data Bank
4. Docking and scoring protein complexes: CAPRI 3rd Edition
5. Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction
6. The other 90% of the protein: Assessment beyond the Cαs for CASP8 template-based and high-accuracy models
7. Comparative protein structure modeling of genes and genomes.
8. Modeling of loops in protein structures
9. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment
10. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

Their papers

• Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment (2016) — 130 citations
• The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment (2018) — 84 citations
• Refinement of unreliable local regions in template‐based protein models (2012) — 73 citations
• Assessment of Protein Model Structure Accuracy Estimation in CASP14: Old and New Challenges (2021) — 51 citations
• GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure (2019) — 128 citations
• De novo protein structure prediction by dynamic fragment assembly and conformational space annealing (2011) — 54 citations
• Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment (2019) — 104 citations
• Resultants and Loop Closure (2006) — 69 citations
• Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment (2021) — 103 citations
• GalaxyRefine: protein structure refinement driven by side-chain repacking (2013) — 1,217 citations
• Assessment of Protein Model Structure Accuracy Estimation in CASP13: Challenges in the Era of Deep Learning (2019) — 56 citations
• GalaxyWEB server for protein structure prediction and refinement (2012) — 905 citations
• High-resolution protein-protein docking by global optimization: recent advances and future challenges. (2015) — 39 citations
• GalaxyDock: Protein-Ligand Docking with Flexible Protein Side-chains (2012) — 65 citations
• Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations. (2007) — 451 citations
• GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization (2015) — 273 citations
• Using quaternions to calculate RMSD (2004) — 369 citations
• Structural basis of neuropeptide Y signaling through Y1 receptor (2022) — 57 citations
• GalaxyTongDock: Symmetric and asymmetric ab initio protein–protein docking web server with improved energy parameters (2019) — 48 citations
• Protein Loop Modeling Using a New Hybrid Energy Function and Its Application to Modeling in Inaccurate Structural Environments (2014) — 76 citations