Daniel J. Mandell
Molecular Biology · 2009–2019
A researcher in the Science corpus: 5 papers; trusts 5 researchers and is trusted by 27 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 82 citations into it; #9,022 of 17,773 by trust here, #2,699 by citations
- Materials Chemistry — 41 citations into it; #8,379 of 11,513 by trust here, #9,794 by citations
- Computational Biology & Bioinformatics — 19 citations into it
- Genetics — 10 citations into it
- Computational Theory and Mathematics — 6 citations into it
Whom Daniel J. Mandell trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- K. Simons
- David Baker
- Chaok Seok
- Andreas Wagner
- Ken A. Dill
- Charles L. Kooperberg
- Richard Bonneau
- Adrian A. Canutescu
- Pehr Harbury
- Matthew P. Jacobson
Who trusts Daniel J. Mandell overall
- Tanja Kortemme
- I. Samish
- Andrew Leaver-Fay
- Amelie Stein
- Xingjie Pan
- Noah Ollikainen
- Po-Ssu Huang
- Namrata Anand
- Enrique Marcos
- Brian G. Pierce
Papers from Daniel J. Mandell's perspective
Ordered by how strongly the researchers Daniel J. Mandell trusts endorse each paper. Same corpus, a different order for every researcher.
- De novo protein design: fully automated sequence selection.
- Ab initio protein structure prediction of CASP III targets using ROSETTA
- Protein Structure Prediction and Structural Genomics
- Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.
- Modeling structurally variable regions in homologous proteins with rosetta
- Macromolecular modeling with rosetta.
- Atomic accuracy in predicting and designing non-canonical RNA structure
- Structure prediction for CASP8 with all-atom refinement using Rosetta
- Exploring protein native states and large‐scale conformational changes with a modified generalized born model (Proteins: Structure, Function, and Bioinformatics)
- Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations. (Journal of Molecular Biology)
Their papers
- Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules (2011) — 1,780 citations
- Backbone flexibility in computational protein design. (2009) — 111 citations
- Computational design of a modular protein sense/response system (2019) — 124 citations
- Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling (2009) — 967 citations
- Biocontainment of genetically modified organisms by synthetic protein design (2015) — 423 citations