Using quaternions to calculate RMSD

By E. Coutsias, Chaok Seok, Ken A. Dill. Journal of Computational Chemistry, 2004

369 citations recorded by the source corpus.

Subfields: Molecular Biology, Physical and Theoretical Chemistry, Spectroscopy

View Paper: https://www.semanticscholar.org/paper/28835a286a9b1ea53812ee6c68cda6ed9911ae27

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In Molecular Biology

1. Jun Li
2. Sicheng Zhang
3. Shi-Jie Chen

Citations in the corpus

• Advancing RNA 3D Structure Prediction: Exploring Hierarchical and Hybrid Approaches in CASP15 (2023, background): “It is a more sensitive metric for evaluating global structural similarity than RMSD, as it is less affected by local structural errors.”
• AlphaFold2 models indicate that protein sequence determines both structure and dynamics (2022, background): “( a ) The AF2 scores correlate well with the RMSF values calculated with a domain-specific approach (see in main text); the IUPRED2 scores also show a correlation to the RMSD.”