M. V. van Dijk
Molecular Biology · 2006–2016
A researcher in the Science corpus: 7 papers; trusts 29 researchers and is trusted by 19 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 86 citations into it; #1,855 of 17,773 by trust here, #4,657 by citations
- Materials Chemistry — 44 citations into it; #2,524 of 11,513 by trust here, #5,138 by citations
- Computational Theory and Mathematics — 29 citations into it
- Computational Biology & Bioinformatics — 16 citations into it; #434 of 660 by trust here, #650 by citations
- Computational Chemistry & Drug Discovery — 10 citations into it
- Radiology, Nuclear Medicine and Imaging — 9 citations into it
Whom M. V. van Dijk trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Xiang-Jun Lu
- Rolf Boelens
- A. V. van Dijk
- Alexandre M. J. J. Bonvin
- Wilma K. Olson
- Joël Janin
- Irwin D. Kuntz
- Helen M. Berman
- Nicholas M. Luscombe
- Christopher Sander
Who trusts M. V. van Dijk overall
- Alexandre M. J. J. Bonvin
- Zeynep Kurkcuoglu
- Yonghong Zhang
- Rodrigo Vargas Honorato
- Xiang-Jun Lu
- Yumeng Yan
- Shuxiang Li
- Wilma K. Olson
- S. D. de Vries
- Christine A. Larsen
Papers from M. V. van Dijk's perspective
Ordered by how strongly the researchers M. V. van Dijk trusts endorse each paper. Same corpus, a different order for every researcher.
- The Protein Data Bank.
- Principles of docking: An overview of search algorithms and a guide to scoring functions
- Biological Crystallography Experimental Phasing with Shelxc/d/e: Combining Chain Tracing with Density Modification
- Assessment of blind predictions of protein–protein interactions: Current status of docking methods
- SWISS-MODEL: an automated protein homology-modeling server
- Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and experimental data.
- Database of homology‐derived protein structures and the structural meaning of sequence alignment
- Structure model of a complex between the factor for inversion stimulation (FIS) and DNA: modeling protein-DNA complexes with dyad symmetry and known protein structures.
- DNA recognition by beta-sheets in the Arc repressor-operator crystal structure.
- PatchDock and SymmDock: servers for rigid and symmetric docking
Their papers
- The HADDOCK web server for data-driven biomolecular docking (2010) — 1,379 citations
- HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets (2007) — 578 citations
- Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility (2006) — 193 citations
- 3D-DART: a DNA structure modelling server (2009) — 327 citations
- The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes. (2016) — 2,479 citations
- A protein–DNA docking benchmark (2008) — 78 citations
- Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance (2010) — 55 citations