Structure model of a complex between the factor for inversion stimulation (FIS) and DNA: modeling protein-DNA complexes with dyad symmetry and known protein structures.

By C. Sandmann, F. Cordes, W. Saenger. 1996

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1. M. V. van Dijk
2. Alexandre M. J. J. Bonvin
3. A. V. van Dijk
4. David A. Case
5. V. Hsu
6. V. Tsui
7. V. Roberts
8. Rolf Boelens

Citations in the corpus

• Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility (2006, methodology): “In another approach, a library of pre-bent DNA structures was used to minimize the search through DNA conformational space ( 10 ); a selection was made based on structures that could be electrostatically preorientated in the potential of the protein and these were rotated and translated with respect”
• Predicting interactions of winged‐helix transcription factors with DNA (2004, methodology): “9 Limited to proteins with a twofold symmetry, appropriately bent DNA models were selected in a prelimi-nary scan based on calculation of electrostatic energy and experimental information.”