Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.

Proceedings of the National Academy of Sciences of the United States of America, 2004

1,002 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/eeb5e168b1d2f82c73c9371c7e9056f7954b4013

Citations in the corpus

• A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. (2006, positive): “Small RNA cDNA libraries were prepared for standard sequencing as in Lau et al. (2001) and for”
• MicroRNA Directs mRNA Cleavage of the Transcription Factor NAC1 to Downregulate Auxin Signals for Arabidopsis Lateral Root Development (2005, positive): “Recent results have shown that in both animals and plants, miRNAs are transcribed from Pol II promoters (Kurihara and Watanabe, 2004; Parizotto et al., 2004).”
• Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs[OPEN] (2013, positive): “This is consistent with models of passenger strand removal due to AGO conformational changes in animals (Gu et al., 2012; Kwak and Tomari, 2012).”
• Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. (2008, positive): “2, are processed sequentially from their common precursor (Kurihara and Watanabe, 2004) and contain a 50 terminal U and A, respectively.”
• Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis[W][OA] (2006, neutral): “The design principles for amiRNAs have been generalized and integrated into a Web-based tool (http://wmd.weigelworld.org).”
• Complexity of the Alternative Splicing Landscape in Plants[C][W][OPEN] (2013, neutral): “AS of primary transcripts due to IR and exon skipping of several plant miRNAs has been reported (Aukerman and Sakai, 2003; Kurihara and Watanabe, 2004; Hirsch et al., 2006; Szarzynska et al., 2009).”
• Gene silencing in plants using artificial microRNAs and other small RNAs. (2008, positive): “Plant precursors are processed in the nucleus by DCL1 in a twostep cleavage event, which releases a duplex of miRNA and miRNA* (Kurihara and Watanabe, 2004).”
• microRNA-directed phasing during trans-acting siRNA biogenesis in plants. (2005, neutral): “Plants contain four DICER-LIKE (DCL) proteins, one of which (DCL1) is necessary for maturation of most or all miRNA precursors (Kurihara and Watanabe, 2004; Park et al., 2002; Reinhart et al., 2002; Schauer et al., 2002).”
• Arabidopsis microRNA167 controls patterns of ARF6 and ARF8 expression, and regulates both female and male reproduction (2006, positive): “Nevertheless, miRNAs can act by other regulatory mechanisms, including translational inhibition and methylation-induced gene silencing (Bao et al., 2004; Bartel, 2004; Chen, 2004; Kurihara and Watanabe, 2004).”
• Evolution and Functional Diversification of MIRNA Genes (2011, positive): “In the majority of cases, DCL1 first catalyzes cleavage of the foldback at the loop-distal side, and subsequently on the loop-proximal side, of the miRNA/miRNA* region, in a sequential manner like that in animals (Kurihara and Watanabe, 2004).”
• Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. (2010, positive): “Dicer cleavage of a mirtron hairpin In plants, a few pri-miRNA hairpins with long, continuous RNA duplexes are cleaved sequentially by Dicer to generate two adjacent miRNA:miRNA* duplexes (Kurihara and Watanabe 2004; Rajagopalan et al. 2006).”
• Cooperative Regulation of Flavonoid and Lignin Biosynthesis in Plants (2021, positive): “Pri-miRNA is cleaved by DCL1 to form miRNA/miRNA duplex (Tang et al., 2003; Kurihara and Watanabe, 2004) and HEN1 methylates miRNA/miRNA duplexes (Yang et al.”
• DNA methylation mediated by a microRNA pathway. (2010, positive): “Plants lack Drosha homologs, and both processing steps are catalyzed by a Dicer-like enzyme (DCL1) in the nucleus (Kurihara et al., 2006; Kurihara and Watanabe, 2004; Park et al., 2002; Reinhart et al., 2002). miRNAs are loaded into an Argonaute (AGO) protein to form the RNA-induced silencing…”
• Plant microRNA: a small regulatory molecule with big impact. (2006, positive): “miRNA biogenesis requires multiple steps in order to form mature miRNAs from miRNA genes (Bartel, 2004; Kurihara and Watanabe, 2004).”
• Post-transcriptional small RNA pathways in plants: mechanisms and regulations. (2006, positive): “DCL1 has both Drosha and Dicer functions and was found in the nucleus (Park et al. 2002; Reinhart et al. 2002; Papp et al. 2003; Kurihara and Watanabe 2004).”