Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

By Nicole T. Perna, Guy Plunkett, V. Burland, Bob Mau, J. Glasner, D. Rose, G. Mayhew, P. Evans, J. Gregor, H. Kirkpatrick and 18 more. Nature, 2001

2,096 citations recorded by the source corpus.

Subfields: Ecology, Endocrinology, Infectious Diseases

View Paper: https://www.semanticscholar.org/paper/a9e5072f37dc9d6d043954beb04cdab0177cd269

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Citations in the corpus

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons (2011, neutral): “EDL933 AE005174 [25]”
Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology (2011, background): “Acid resistance at pH 2.5 for strains LB226692 and 01-09591 was tested as previously published [43] with an inoculum of 20,000 CFU/ml and EHEC O157:H7 strain EDL933 [19] as a control.”
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes (2014, methodology): “Genome assembly [4,68-75], followed by whole-genome alignment [38,76,77], is the original method for variant detection between closely related bacterial genomes [78] and has been shown to perform well across multiple sequencing platforms [79].”
Ψ-Φ: Exploring the outer limits of bacterial pseudogenes (2004, background): “…derived from - were compared and combined with those reported in the original annotations—E. coli MG1655 (Blattner et al. 1997); E. coli EDL933 (Perna et al. 2001); S. flexneri 2a (Jin et al. 2002)—and in subsequent publications (e.g., Homma et al. Genome Research 2277 www.genome.org 2002).”
Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains (2002, background): “Furthermore, significant differences can be documented among the genomes of laboratory strains with long histories of passage and among recent clinical isolates ( 25 ).”
Mauve: multiple alignment of conserved genomic sequence with rearrangements. (2004, neutral): “When studying the differences between Escherichia coli O157:H7 EDL933 and K-12 MG1655, it became clear that a small number of horizontal transfers introducing large regions of sequence have occurred, whereas the majority of transfers introduced small sequence regions.”
What are bacterial species? (2002, background): “More recently the sequencing of multiple genomes within species has shown considerable variation in the genes contained (3, 70, 71, 78, 93).”
Recent Advances in Understanding Enteric Pathogenic Escherichia coli (2013, background): “For example, nearly one-quarter of the EAEC strain 042 genomic content is made up of genomic islands (27), similar to the percentage of unique genomic islands found in STEC O157:H7 strain EDL933 (28).”
Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria (2005, neutral): “ece Escherichia coli 0157:H7 EDL933 NC_002655 Perna et al. (2001)”
Enterohaemorrhagic Escherichia coli: emerging issues on virulence and modes of transmission. (2005, background): “sequence of EHEC O157:H7 [71, 134] showed that almost 20% of its chromosome is constituted of foreign DNA not present in”
Salmonella interactions with host cells: type III secretion at work. (2001, neutral): “SPI-1 TTSS is strikingly similar to a recently identified TTSS in Escherichia coli 0157:H7, the causative agent of hemolytic uremic syndrome, associated with a number of outbreaks due to tainted beef products (Perna 2001).”
Enterohemorrhagic Escherichia coli O157∶H7 Gene Expression Profiling in Response to Growth in the Presence of Host Epithelia (2009, neutral): “E. coli O157:H7 strain EDL933 contains 1.34 Mb of genomic information that is absent in non-pathogenic E. coli , strain K-12 [9].”