Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis

By O. Borsani, Jianhua Zhu, P. Verslues, Ramanjulu Sunkar. Cell, 2005

1,131 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/4100c1b42ee545e95447e4762191e2e70c96a77b

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Citations in the corpus

Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. (2007, neutral): “Third, natural sense and anti-sense transcripts and other read-through transcripts may participate in defense mechanisms (16) and may be accumulated differently in the progenitors.”
Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3 (2006, positive): “A large fraction of the genes in Arabidopsis have antisense transcripts (Borsani et al., 2005; Jen et al., 2005; Wang et al., 2005a; Yamada et al., 2003).”
Regulatory metabolic networks in drought stress responses. (2007, positive): “This paper reports a novel RNA silencing mechanism in which nat-siRNAs are generated from the overlapping gene regions and play an important role in the stress tolerance by switching off the sense transcript.”
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide. (2008, neutral): “dsRNAs formed by convergent transcription of two genes are processed by DCL2 into 24 nt natsiRNAs, which direct the further production of 21 nt natsiRNAs in a DCL1-dependent fashion (Borsani et al., 2005).”
Mechanisms of high salinity tolerance in plants. (2007, neutral): “The role of endogenous siRNA in regulating the salinity tolerance in Arabidopsis is also being studied (Borsani et al., 2005), which will be further helpful in our better understanding of the mechanism of salinity stress.”
Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. (2006, neutral): “…et al. 2005). ta-siRNAs are processed from dsRNAs synthesized by an endogenous RNA-dependent RNA polymerase (RdRp) utilizing endogenous mRNAs as template (Peragine et al. 2004). nat-siRNAs are processed from dsRNAs formed between endogenous sense and antisense transcripts (Borsani et al. 2005).”
Small RNAs as big players in plant abiotic stress responses and nutrient deprivation. (2007, neutral): “Thus, the SRO5-P5CDH nat-siRNAs together with the P5CDH and SRO5 proteins form an important regulatory loop controlling proline and ROS production and stress tolerance [ 74 ].”
PsRobot: a web-based plant small RNA meta-analysis toolbox (2012, neutral): “The parameters for users to adjust include the following: (1) penalty score for the alignment between smRNAs and targets, which is defined by the formulas below; (2) the boundaries of essential sequence region, within which mismatches or gaps will receive double penalty scores than other regions; (3”
Active DNA Demethylation Mediated by DNA Glycosylases (2009, neutral): “MicroRNAs and small interfering RNAs (siRNAs) are sequence-specific guides for gene silencing (4, 11, 13, 63, 93).”
Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants (2011, neutral): “However, reduced P5CDH activity also leads to the accumulation of P5C (a toxic metabolic intermediate) and ROS; that accumulation is probably countered by the SRO5 protein through direct detoxification activity in the mitochondria [112].”