Arabidopsis Map-Based Cloning in the Post-Genome Era

By Georg Jander, S. R. Norris, S. Rounsley, D. Bush, I. Levin, R. Last. Plant Physiology, 2002

720 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/a262d7de09afff24f7a033386b89dc49197bb639

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Citations in the corpus

Arabidopsis PEN3/PDR8, an ATP Binding Cassette Transporter, Contributes to Nonhost Resistance to Inappropriate Pathogens That Enter by Direct Penetration[W][OA] (2006, methodology): “New markers within the mapping interval were generated using the CEREON database of Col-0 and Ler polymorphisms (Jander et al., 2002) and the Whitehead Institute online primer design software, Primer3 (Rozen and Skaletsky, 2000; http://frodo.”
The Rice Tapetum Degeneration Retardation Gene Is Required for Tapetum Degradation and Anther Development[W] (2006, methodology): “For fine-mapping of the TDR locus, we developed InDel molecular markers based on the sequence difference between japonica variety Nipponbare and indica variety 9311 (Jander et al., 2002).”
Efficient Control of Population Structure in Model Organism Association Mapping (2008, background): “W ITH the recent development of high-throughput genotyping technologies, genetic variation in many model organisms such as mice, Arabidopsis, and maize is being discovered on a genomewide scale ( J ander et al. 2002; P letcher et al. 2004; F lint -”
Industry Induces Academic Science to Know Less about More1 (2010, background): “It beat the public sector to about 10,000 of the estimated 25,000 Arabidopsis genes (Jander et al. 2002).”
PHO2, MicroRNA399, and PHR1 Define a Phosphate-Signaling Pathway in Plants1[W][OA] (2006, methodology): “The markers were identified from the genetic maps provided by The Arabidopsis Information Resource (TAIR; http://www. arabidopsis.org) or designed using the CEREON genomics database of Columbia-Landsberg polymorphisms (Jander et al., 2002).”
SNP Discovery through Next-Generation Sequencing and Its Applications (2012, background): “NGS-derived SNPs have been reported in humans [79], Drosophila [80], wheat [81, 82], eggplant [83], rice [84–86], Arabidopsis [87, 88], barley [14, 89], sorghum [90], cotton [91], common beans [78], soybean [92], potato [93], ﬂax [94], Aegilops tauschii [95], alfalfa [96], oat [97], and maize [98]…”
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community (2003, background): “Cereon has also released 95 Mb of sequence from the Ler strain, which is comprised of 81 306 sequence entries from a single-pass shotgun sequencing (7).”
A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana (2009, background): “. In addition, an extensive repertoire of genomic tools facilitate the cloning of quantitative trait loci (QTL)”
Temporal analysis of natural variation for the rate of leaf production and its relationship with flowering initiation in Arabidopsis thaliana (2010, positive): “org) and 36 indels developed in this work based on Ler/Col sequence polymorphisms (Jander et al., 2002) were evenly selected at approximate physical intervals of 1.”
SCD1 is required for cell cytokinesis and polarized cell expansion in Arabidopsis thaliana (2003, methodology): “html) (Jander et al., 2002) were used to map scd1-1to a 65 kb region on the BAC clone F27J15, containing 18 predicted genes on chromosome I.”
Physiology and molecular biology of stress tolerance in plants (2006, methodology): “…this method of identifying genes for stress response was the effort required to make a physical map to develop markers for identifying the genetic locus to be followed by cloning, determining the sequence of the region and validation of gene function through complementation (Jander et al., 2002).”