The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

By Seung Yon Rhee, W. Beavis, T. Berardini, Guanghong Chen, D. A. Dixon, Aisling Doyle, M. Garcia-Hernandez, E. Huala, Gabriel Lander, Mary Montoya and 11 more. Nucleic Acids Res., 2003

946 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/8faccc02f96d1b6d043f69bcae61d48ef2afbe8c

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Citations in the corpus

Physiology and molecular biology of stress tolerance in plants (2006, background): “The Arabidopsis Information Resource (TAIR) is the most well integrated platform for Arabidopsis researcher’s world wide including data contributed by over 11,000 researchers and 4,000 organizations available at http://arabidopsis.org (Rhee, 2000; Rhee et al., 2003).”
An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets (2007, methodology): “Among the various portals for analyzing microarray data that have been developed are TAIR [5,6], AraCyc [7], MAPMAN [8], GENEVESTIGATOR [9], and several tools of the Bio-Array Resource [10].”
Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution (2004, background): “Finally, we found a pair of membrane amino acid transporter genes (pair 2039) undergoing concerted divergence with two other membrane protein genes (pair 99) (Figure 4A).”
Extension of the Visualization Tool MapMan to Allow Statistical Analysis of Arrays, Display of Coresponding Genes, and Comparison with Known Responses1 (2005, background): “From there it is then possible to directly query various information resources such as The Arabidopsis Information Resource (TAIR; Rhee et al., 2003) for a particular gene associated with an Affymetrix probe set.”
The Sequence Ontology: a tool for the unification of genome annotations (2005, background): “Other centers such as The Institute for Genomic Research (TIGR) [2] and the Joint Genome Institute (JGI) [3] also maintain and distribute annotations, as do many model organism databases such as FlyBase [4], WormBase [5], The Arabidopsis Information Resource (TAIR) [6] and the Saccharomyces Genome D”
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes (2005, background): “Often called model organism databases, or organism-specific databases, examples include EcoCyc for Escherichia coli (1), PseudoCyc for Pseudomonas aeruginosa (2), PlasmoCyc for Plasmodium falciparum (3), SGD for Saccharomyces cerevisiae (4), TAIR for Arabidopsis thaliana (5), MGD for Mus musculus (m”
Potential of metabolomics as a functional genomics tool. (2004, background): “Possibly the most advanced genomics database for plants is The Arabidopsis Information Resource (TAIR) [ 35 ].”
The BioGRID Interaction Database: 2008 update (2007, methodology): “Analogous relationships are underway with the Arabidopsis Information Resource (TAIR) and S. pombe GeneDB (15, 21 ).”
The Universal Protein Resource (UniProt): an expanding universe of protein information (2005, methodology): “The INTERACTION comment is derived automatically from the IntAct database (9) and is updated on a monthly basis.”
Arabidopsis cytochrome P450s through the looking glass: a window on plant biochemistry (2006, background): “…in the datasets compiled for different investigators available on the websites for Genevestigator (Zimmerman et al. 2004; https:// www.genevestigator.ethz.ch/at/), TAIR (Rhee et al. 2003; http://www.arabidopsis.org/) and GEO (Barrett et al. 2005; http://www.ncbi.nlm.nih. gov/projects/geo/).”
GMD@CSB.DB: the Golm Metabolome Database (2005, background): “, 2004), TAIR (Rhee et al., 2003) and TIGR (Quackenbush et al.”
The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses. (2005, methodology): “0 ‘Present’, ‘Marginal’, or ‘Absent’ calls) keyed by probe set ID, and appended with annotation information from TAIR.”
Lepbase: the Lepidopteran genome database (2016, background): “All results and datafiles are available at http://download.lepase.org”
AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors (2003, background): “main data sources of AGRIS are TAIR [[9]http://www.”
UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View. (2016, neutral): “The Arabidopsis Information Resource (TAIR) (16) (http://www.”