Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

By B. Wilhelm, S. Marguerat, S. Watt, Falk Schubert, V. Wood, I. Goodhead, C. Penkett, J. Rogers, J. Bähler. Nature, 2008

1,039 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/7aaf7ef08b2cad73cc487482ec98991c9f5a28f4

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In Molecular Biology

Citations in the corpus

Utilization of next-generation sequencing platforms in plant genomics and genetic variant discovery (2010, background): “…that could benefit from such short read lengths (Barski et al. 2007; Fahlgren et al. 2007; Johnson et al. 2007; Kasschau et al. 2007; Cokus et al. 2008; Lister et al. 2008; Lu et al. 2008; Mortazavi et al. 2008; Nobuta et al. 2008; Sultan et al. 2008; Sunkar et al. 2008; Wilhelm et al. 2008).”
A single-molecule long-read survey of the human transcriptome (2013, background): “(1) protein coding (2) processed transcript (3) retained intron (4) nonsense mediated decay (5) processed pseudogene (6) lincRNA”
DNA sequencing at 40: past, present and future (2017, neutral): “RNA-seq uses NGS to quantify and characterize the transcriptome by shotgun sequencing of either full-length or 3 ′ ends of cDNA 110–114 .”
An RNA-Sequencing Transcriptome and Splicing Database of Glia, Neurons, and Vascular Cells of the Cerebral Cortex (2014, background): “…in lower falsenegative and false-positive discovery rates in addition to a greater linear range (Bainbridge et al., 2006; Cloonan et al., 2008; Marioni et al., 2008; Mortazavi et al., 2008; Nagalakshmi et al., 2008; Sultan et al., 2008; Wilhelm et al., 2008; Trapnell et al., 2010; Wu et al., 2010).”
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression (2008, methodology): “The first sequencing-based data sets to be made public are the transcriptomics landscape for Schizosaccharomyces pombe and epigenomics analysis of human (accession numbers E-MTAB-5 and E-TABM482) (13,14).”
Regulation of circRNA biogenesis (2015, background): “Being covalently closed, without polyadenylation at their 30 ends,(11,12) most circular RNAs have fallen below the radar of transcriptomic polyadenylated RNA profiling.(13,14) Recently, with the depletion of both polyadenylated RNAs and rRNAs, non-polyadenylated human RNAs could be enriched for RNA ”
The technology and biology of single-cell RNA sequencing. (2015, methodology): “Subsequently, RNA sequencing (Cloonan et al., 2008; Marioni et al., 2008; Mortazavi et al., 2008; Nagalakshmi et al., 2008; Wilhelm et al., 2008) was quickly adapted for analyzing single cells.”
Evolution and functions of long noncoding RNAs. (2009, background): “ranging from plants to animals and, most recently, to fungi such as the fission yeast Schizosaccharomyces pombe (Dutrow et al., 2008; Wilhelm et al., 2008) and the budding yeast Saccharomyces cerevisiae (Nagalakshmi et al.”
A quantitative atlas of polyadenylation in five mammals (2012, methodology): “…2009; Wang et al. 2009; Levin et al. 2010) and have been used to discover and monitor alternative splicing (Sultan et al. 2008; Wang et al. 2008; Wilhelm et al. 2008), as well as gene expression (Marioni et al. 2008) and its underlying regulatory genetic variation (Montgomery et al. 2010;…”
Transcriptomics technologies (2017, neutral): “sequences to be recorded [4][10][41][42].”