Alvis Brazma
Molecular Biology · 2000–2021
A researcher in the Science corpus: 31 papers; trusts 31 researchers and is trusted by 21 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 425 citations into it; #2,328 of 17,773 by trust here, #501 by citations
- Genetics — 98 citations into it
- Plant Science — 37 citations into it
- Artificial Intelligence — 34 citations into it
- Biophysics — 12 citations into it
Whom Alvis Brazma trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Nir Friedman
- Attila Becskei
- Réka Albert
- Michael B. Elowitz
- Dana Pe'er
- Ash A. Alizadeh
- Eran Segal
- George C. Tseng
- Luis Serrano
- A. Ramasamy
Who trusts Alvis Brazma overall
- Aik Choon Tan
- Tanya Barrett
- Trey Ideker
- Trond Hellem Bø
- Iñaki Inza
- Ali Anaissi
- Bjarte Dysvik
- Yoav Benjamini
- Vladimir Shulaev
- Heather A. Piwowar
Papers from Alvis Brazma's perspective
Ordered by how strongly the researchers Alvis Brazma trusts endorse each paper. Same corpus, a different order for every researcher.
- Gene Expression Omnibus: NCBI gene expression and hybridization array data repository (Nucleic Acids Res.)
- Controlling the false discovery rate: a practical and powerful approach to multiple testing
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
- The Universal Protein Resource (UniProt): an expanding universe of protein information (Nucleic Acids Res.)
- Bioconductor: open software development for computational biology and bioinformatics (Genome Biology)
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome (Genome Biology)
- A gene atlas of the mouse and human protein-encoding transcriptomes. (Proceedings of the National Academy of Sciences of the United States of America)
- Network motifs: simple building blocks of complex networks.
- A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis (Nature Biotechnology)
- Gene Ontology: tool for the unification of biology
Their papers
- ArrayExpress—a public repository for microarray gene expression data at the EBI (2004) — 1,203 citations
- Tools for mapping high-throughput sequencing data (2012) — 297 citations
- The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data (2004) — 687 citations
- Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments (2013) — 330 citations
- Transcriptome and genome sequencing uncovers functional variation in humans (2013) — 2,017 citations
- Minimum information about a microarray experiment (MIAME)—toward standards for microarray data (2001) — 4,236 citations
- The PRIDE database and related tools and resources in 2019: improving support for quantification data (2018) — 6,119 citations
- International network of cancer genome projects (2010) — 2,229 citations
- Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project (2008) — 565 citations
- Gene expression data analysis. (2001) — 379 citations
- ArrayExpress update—trends in database growth and links to data analysis tools (2012) — 388 citations
- ArrayExpress update—simplifying data submissions (2014) — 700 citations
- ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression (2008) — 457 citations
- Design and implementation of microarray gene expression markup language (MAGE-ML) (2002) — 491 citations
- The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences (2021) — 5,133 citations
- Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants (2015) — 512 citations
- Genomic basis for RNA alterations in cancer (2020) — 354 citations
- ArrayExpress—a public database of microarray experiments and gene expression profiles (2006) — 744 citations
- Expression Atlas: gene and protein expression across multiple studies and organisms (2017) — 361 citations
- ArrayExpress update – from bulk to single-cell expression data (2018) — 508 citations