Genome-Wide Analysis of the General Stress Response Network in Escherichia coli: σS-Dependent Genes, Promoters, and Sigma Factor Selectivity

By Harald Weber, T. Polen, Johanna Heuveling, V. Wendisch, Regine Hengge. Journal of Bacteriology, 2005

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Regulation of transcription from the fusion promoters generated by transposition of Tn4652 into the upstream region of pheBA operon in Pseudomonas putida (2005, positive): “CTA nucleotides at positions –13 to –11 and T nucleotide at position –7 were most conserved (Weber et al., 2005).”
Hfq Modulates the σE-Mediated Envelope Stress Response and the σ32-Mediated Cytoplasmic Stress Response in Escherichia coli (2006, background): “In addition, since only three -dependent genes (56) were differentially regulated in the 269 gene set, we were successful in minimizing indirect effects resulting from reduced S translation in hfq mutant strains.”
Stress-induced transposition of Tn4652 in Pseudomonas putida (2006, background): “The expression of stationary phase-specific genes is mostly controlled by sigma subunit σS (encoded by rpoS and thereby also called RpoS) of RNA polymerase, which expression is induced by various stress conditions (Loewen and Hengge-Aronis, 1994; Hengge-Aronis, 2002a; Weber et al., 2005).”
Escherichia coli Physiology in Luria-Bertani Broth (2007, background): “This sigma factor governs the expression of 252 E. coli genes on entry into stationary phase ( 13 ).”