Functional Annotation of a Full-Length Arabidopsis cDNA Collection
By Motoaki Seki, M. Narusaka, Asako Kamiya, Junko Ishida, Masakazu Satou, Tetsuya Sakurai, Maiko Nakajima, A. Enju, Kenji Akiyama, Youko Oono and 10 more. Science, 2002
677 citations recorded by the source corpus.
Subfields: Molecular Biology, Plant Science
View Paper: https://www.semanticscholar.org/paper/6cf19e99e572c0bd2245b3f6620837c96bd22e71
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In Molecular Biology
- Steven L. Salzberg
- Brian J. Haas
- Mark Yandell
- Carson Holt
- Marc Vidal
- Arthur L. Delcher
- Christopher D. Town
- David E. Hill
In Plant Science
- O. Leprince
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- Steven L. Salzberg
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Citations in the corpus
- The Arabidopsis cytochrome P450 CYP707A encodes ABA 8′‐hydroxylases: key enzymes in ABA catabolism (2004, methodology): “Functional expression in yeast Full-length cDNA of candidate P450 genes were obtained from RIKEN BRC Experimental Plant Division, Arabidopsis full-length cDNA collection ( Seki et al, 2002 ).”
- Genome Annotation in Plants and Fungi: EuGene as a Model Platform (2008, background): “Second, the Riken Institute produced especially extended full-length cDNAs sequenced at both extremities that produced EST couples [40].”
- The reduction of seed-specific dehydrins reduces seed longevity in Arabidopsis thaliana (2011, methodology): “A. thaliana and seed production LEA14 (At2g21490; PF00257) was cloned from the RIKEN full-length cDNA clone RAFL09-38-N20 (Seki et al., 1998, 2002).”
- The Ins and Outs of Nondestructive Cell-to-Cell and Systemic Movement of Plant Viruses (2004, neutral): “, 1998 ; Seki et al. , 2002 ; Simon, 1994 ; Szabados et al.”
- Applications of next-generation sequencing technologies in functional genomics. (2008, methodology): “Other sequencing-based methods such as full-length cDNA sequencing [57] and the generation of expressed sequence tags (ESTs), which are single sequencing reads derived from one end of a cDNA clone [58,59], have been used to characterize cellular mRNA profiles.”
- Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. (2003, methodology): “Even with the completed genome, Arabidopsis EST sequences are continuing to be generated as a tool to analyze tissue-speci®c gene expression (27,28) and, more pragmatically, as a strategy to identify full-length insert cDNA clones (18).”
- Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004, neutral): “…There are a number of established collections of nonhuman cDNAs, such as those of Drosophila melanogaster (Stapleton et al. 2002), Danio rerio (Clark et al. 2001), Arabidopsis thaliana (Seki et al. 2002), Plasmodium falciparum (Watanabe et al. 2002), and Trypansoma cruzi (Urmenyi et al. 1999).”
- C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression (2003, background): “Particularly, thousands of full-length cDNAs are now available for human, mouse and Arabidopsis thaliana transcripts, providing experimental evidence for roughly 50% of the genes predicted from the genome sequence annotation of these organism”
- MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations1[W][OPEN] (2013, background): “In addition, there is a large pool of experimental evidence available to aid the annotation of the Arabidopsis genome, including traditional ESTs, full-length complementary DNAs (cDNAs), and vast amounts of RNA-Seq data (Rounsley et al., 1996; Paz-Ares, 2002; Seki et al., 2002; Yamada et al., 2003).”