Genome Annotation in Plants and Fungi: EuGene as a Model Platform
By S. Foissac, J. Gouzy, Stephane Rombauts, Catherine Mathé, J. Amselem, L. Sterck, Y. Van de Peer, Pierre Rouzé, Thomas Schiex. 2008
120 citations recorded by the source corpus.
Subfields: Genetics, Molecular Biology, Plant Science
View Paper: https://www.semanticscholar.org/paper/30fc018d1db7fd0307fd39c85ae24f99d2ca33c8
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In Genetics
- Roderic Guigó
- Bernard Henrissat
- Tatiana Giraud
- Jinfeng Chen
- Pradeep K. Singh
- Y. Van de Peer
- Christina A. Cuomo
- Jeffrey A. Fawcett
In Molecular Biology
- Bernard Henrissat
- James J. Giovannoni
- Pedro M. Coutinho
- M. Bouzayen
- Daisuke Shibata
- Jeffrey A. Fawcett
- Giorgio Valle
- Thomas Schiex
In Plant Science
- M. Bouzayen
- James J. Giovannoni
- Bernard Henrissat
- P. Lindhout
- Jeffrey A. Fawcett
- M. Botella
- Jinfeng Chen
- Akhilesh K. Tyagi
Citations in the corpus
- Next-Generation Annotation of Prokaryotic Genomes with EuGene-P: Application to Sinorhizobium meliloti 2011 (2013, methodology): “We designed EuGene-P on the basis of the eukaryotic gene finder, EuGene.14,20 EuGene is able to incorporate the various types of information for enhancing its predictive power and has been used for the annotation of several genomes.21–27 As all recent integrative gene finders, EuGene does not rely o”
- A Snapshot of the Emerging Tomato Genome Sequence (2009, methodology): “Gene fi nders that are trained or have been trained include EuGene (Foissac et al., 2008), GeneMark (Isono et al.”
- GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins (2020, unknown): “Integration of transcript information, e.g. RNA-Seq reads, with ab initio gene prediction was implemented in several algorithms and software tools, e.g. AUGUSTUS (1), GeneMark-ET (2), EuGene (3,4) and mGene.ngs (5).”
- The genome of Theobroma cacao (2011, unknown): “Cacao chromosome Arabidopsis chromosome C1(1321) A1(63)-A2(85)-A3(69)-A4(116)-A5(64) C2(935) A1(89)-A2(30)-A4(61)-A5(10) C3(1018) A1(70)-A3(17)-A4(63)-A5(130) C4(837) A1(21)-A2(9)-A3(94)-A4(36)-A5(44) C5(820) A1(24)-A2(51)-A3(78)-A5(37) C6(616) A1(59)-A2(15)-A4(66)-A5(26) C7(287) A1(5)-A5(32) C8(605”
- Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea (2011, methodology): “Gene prediction was performed using Eugene pipeline version 3 [135].”