Evidence for a core gut microbiota in the zebrafish

By Guus Roeselers, E. Mittge, W. Zac Stephens, D. Parichy, C. Cavanaugh, K. Guillemin, J. Rawls. The ISME Journal, 2011

1,079 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/608ea1cae016e54b13c315e13bb6d8d986cbdaad

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In Molecular Biology

Citations in the corpus

Gut Microbiota and its Modulation for Healthy Farming of Pacific White Shrimp Litopenaeus vannamei (2018, background): “…with previous research in many other aquatic animals, including tiger shrimp (Penaeus monodon) (Rungrassamee et al., 2014) zebrafish (Danio rerio) (Roeselers et al., 2011), grass carp (Ctenopharyngodon idellus) (Wu et al., 2012), and yellow catfish (Pelteobagrus fulvidraco) (Wu et al., 2010).”
Microbiota regulate intestinal absorption and metabolism of fatty acids in the zebrafish (2012, background): “The zebrafish gut microbiota , like that of humans and other mammals, are dominated by the bacterial phyla Proteobacteria, Firmicutes, and Bacteroidetes (Rawls et al., 2004, 2006; Roeselers et al., 2011).”
Changes in the intestinal bacterial community during the growth of white shrimp, Litopenaeus vannamei (2016, background): “2013), mitten crab Eriocheir sinensis (Li, Guan, Wei, Liu, Xu, Zhao & Zhang 2007), sea lamprey Petromyzon marinus (Tetlock, Yost, Stavrinides & Manzon 2012) and zebrafish (Roeselers et al. 2011), In contrast, the human intestinal microbial flora, consists primarily of Bacteroidetes and Firmicutes (E”
Teleost microbiomes: the state of the art in their characterization, manipulation and importance in aquaculture and fisheries (2014, background): “Later studies revealed a “core microbiome” among this species, dominated by γ-Proteobacteria and enriched with a diverse assemblage of Fusobacteria species (Roeselers et al., 2011).”
EFFECTS OF PLANT-BASED DIETS ON THE DISTAL GUT MICROBIOME OF RAINBOW TROUT (Oncorhynchus mykiss). (2012, background): “A comparison of “recently caught” and domesticated zebra fish suggests that the differences would largely consist of a change in relative abundances of constituents of a core microbiome for this species (Roeselers et al., 2011).”
The development of the gut microbiota in rainbow trout (Oncorhynchus mykiss) is affected by first feeding and diet type (2014, methodology): “Different genera of lactic acid bacteria (phylum Firmicutes) have also been described as a normal part of the intestinal microbiota of several fish species (Hovda et al., 2007; Ringo and Gatesoupe, 1998; Roeselers et al., 2011).”
Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development (2015, background): “Zebrafish have historically been used to study vertebrate development, but have also recently emerged as an ideal model for studying interactions between vertebrate hosts and their associated microbial communities (Rawls et al., 2006; Roeselers et al., 2011; Yan et al., 2012; Stephens et al., 2015).”
Insect Gut Bacterial Diversity Determined by Environmental Habitat, Diet, Developmental Stage, and Phylogeny of Host (2014, background): “Microbiomes such as the human gut (69), the human oral cavity (70), and zebrafish guts (71) have also been investigated using a deep-sequencing approach.”
454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants (2011, methodology): “Sequences were denoised using the ‘pre.cluster’ command in Mothur platform to remove sequences that are likely due to pyrosequencing errors (Huse et al., 2010; Roeselers et al., 2011).”
Combined effects of exogenous enzymes and probiotic on Nile tilapia (Oreochromis niloticus) growth, intestinal morphology and microbiome (2016, positive): “Similarly, shared core gut microbiota was observed in zebrafish irrespective of geographical locations (Roeselers et al., 2011).”
The Gut Microbiota of Marine Fish (2018, positive): “However, also observed were variations correlated to lab facility and historical connecxions between these diﬀerent sites (Roeselers et al., 2011).”