Computational and experimental characterization of physically clustered simple sequence repeats in plants.

By L. Cardle, L. Ramsay, D. Milbourne, M. Macaulay, D. Marshall, R. Waugh. Genetics, 2000

430 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/4e0862d1175cce9984bd06a10b9bc672ec83cd25

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

Citations in the corpus

EST-derived SSR markers in Jatropha curcas L.: development, characterization, polymorphism, and transferability across the species/genera (2011, result): “The present finding is contradictory to the earlier reports in wheat, rice, corn, soybean (Cardle et al. 2000), cotton (Han et al. 2006), sugarcane (Cordeiro et al. 2001), barley (Thiel et al. 2003), peanut (Liang et al. 2009), and citrus (Chen et al. 2006) where trinucleotide repeat motifs were…”
Identification of microsatellite polymorphisms in an expressed portion of the rye genome (2002, background): “4% in tomato ESTs based on microsatellite motifs of 314 bp for dinucleotide repeats, 315 bp for trinucleotide repeats and 316 bp for tetranucleotide repeats (Cardle et al. 2000).”
Simple sequence repeats as useful resources to study transcribed genes of cotton (2003, background): “Cardle et al. (2000) reported that 3% of the ESTs available for cotton in EMBL (6/22/99) contained at least one repeat motif.”
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.) (2003, background): “In a comprehensive computational study of Cardle et al. (2000) , average distances (in kb) between SSRs in sets of redundant ESTs were estimated as follows: rice (3.4), maize (8.1), soybean (7.4), tomato (11.1), poplar (14.0), Arabidopsis (13.8) and cotton (20.0).”
Microsatellite markers in hazelnut : Isolation, characterization, and cross-species amplification (2005, background): “The compound repeats contained AT and GA repeats, which are the most common di-nucleotide repeats in plants (Cardle et al., 2000; Lagercrantz et al., 1993; Morgante and Olivieri, 1993; Temnykh et al., 2001; Wang et al., 1994).”
In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species. (2002, result): “However, in some other studies the deficiency of CG and AT motifs has been reported in Arabidopsis [21], rice [7] and maize [26].”
MOLECULAR BIOLOGY AND PHYSIOLOGY EST-SSR: A New Class of Genetic Markers in Cotton (2004, background): “Cardle et al. (2000) reported that the average frequency of SSRs was one every 6.04Kb in genomic DNA and one in every 14 Kb for ESTs in A. thaliana.”
A preliminary genetic analysis of fibre traits and the use of new genomic SSRs for genetic diversity in jute (2008, background): “The results of an analysis of SSRs in 194 selected low-copy sequences are presented in Table 6 and Fig. 1. The trinucleotide repeats were most abundant, and among the different repeats, (T)n and (AAG)n were the most frequent, a feature that is in agreement with earlier studies (Gupta et al. 1996; C”
Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. (2001, methodology): “Long (GA)n DNRs and AT-rich TNRs were targeted because they amplified with the highest efficiency and revealed the most polymorphism overall.”
Development, characterization and cross-species/genera transferability of EST-SSR markers for rubber tree (Hevea brasiliensis) (2008, background): “0 kb), etc. (Cardle et al. 2000).”
Characterization of microsatellites revealed by genomic sequencing of Populus trichocarpa (2004, background): “Cardle et al. (2000) reported an SSR every 14 kb in the pub© 2004 NRC Canada Tuskan et al. 89 Fig.”