In silico analysis on frequency and distribution of microsatellites in ESTs of some cereal species.

By Rajeev K. Varshney, Thomas Thiel, Nils Stein, P. Langridge, A. Graner. Cellular & Molecular Biology Letters, 2002

375 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/04b089e721a9c804cd700be3eda1089bd06f0cd3

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Citations in the corpus

• Microsatellites and their genomic distribution, evolution, function and applications : A review with special reference to fish genetics (2006, background): “They are relatively rare in coding DNA, ranging between 7–10% in higher plants (Wang et al., 1994; Varshney et al., 2002) and between 9–15% in vertebrates (Moran, 1993; Jurka and Pethiyagoda, 1995; Van Lith and Van Zutphen, 1996).”
• Microsatellite markers: an overview of the recent progress in plants (2011, background): “In plants, the most frequent triplet is AAG (Li et al. 2004), although, in cereals, most common triplet is CCG (Cordeiro et al. 2001; Varshney et al. 2002; Thiel et al. 2003).”
• Novel SSR Markers for Polymorphism Detection in Pigeonpea (Cajanus spp.) (2010, methodology): “Non-redundant sequences were analysed with MicroSAtellite (MISA) perl script [http://pgrc.ipk-gatersleben.de/ misa/, (Varshney et al. 2002)] to identify SSRs. Primer pairs flanking the SSR motifs were designed using program PRIMER3 (http:// frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi).”
• An overview of molecular marker methods for plants (2006, background): “…in silico mining efforts for developing EST-SSRs seem to have focused primarily on monocotyledonous crops (Kantety et al., 2002; Thiel et al., 2003; Varshney et al., 2002), although ESTs of a few dicot species have been explored for SSR mining (Eujayl et al. 2004; Morgante et al. 2002; Qureshi et…”
• SciRoKo: a new tool for whole genome microsatellite search and investigation (2007, methodology): “Several bioinformatic tools for the identification of microsatellites in genomic sequences have been developed [see also Varshney et al. (2002) and Table S1 for a comparison].”