Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)

By Thomas Thiel, W. Michalek, Rajeev K. Varshney, A. Graner. Theoretical and Applied Genetics, 2003

2,358 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/ddb9d351b77d4e72b2ff61bd4cc12a5a701ec4da

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. M. Rai
2. Å. Bjornstad
3. Jianming Yu
4. M. L. C. Vieira
5. S. Sawant
6. A. Ranjan
7. A. Graner
8. T. McCollum

In Plant Science

1. Rajeev K. Varshney
2. M. Sorrells
3. Å. Bjornstad
4. K. Semagn
5. A. Börner
6. A. Graner
7. R. Aggarwal
8. R. Saxena

Citations in the corpus

• Methods for Development of Microsatellite Markers: An Overview (2014, positive): “The generation of SSR markers from EST resources is relatively fast and inexpensive (Thiel et al., 2003; Gupta et al., 2003) and could be achieved rapidly using bioinformatics softwares (Varshney et al.”
• Genetic Diversity in Switchgrass Collections Assessed by EST-SSR Markers (2008, background): “EST-SSRs analyze polymorphism that are associated with the coding regions of the genome and are capable of detecting the genetic diversity available inside or adjacent to the genes [8, 44 ].”
• Molecular markers for genebank management (2005, neutral): “2002) and barley (Thiel et al. 2003).”
• Microsatellites and their genomic distribution, evolution, function and applications : A review with special reference to fish genetics (2006, background): “In order to hypothesize about putative functions of SSR-containing genes, these sequences are needed for comparison to the database of amino acid sequences (Kantety et al., 2002; Thiel et al., 2003).”
• Genic Molecular Markers in Plants: Development and Applications (2007, background): “vulgare) EST-SSR, EST-SNP Wheat, rice, rye Thiel et al. 2003, Varshney et al. 2004, 2007b”
• Microsatellite markers: an overview of the recent progress in plants (2011, background): “The 50-UTRs contained more triplets than the 30-UTRs in Arabidopsis (Morgante et al. 2002) and barley (Thiel et al. 2003).”
• Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSR_1.0) in Soybean (2010, methodology): “The striking diff erence of polymorphism between the SSRs derived from EST versus genomic sequence has also been reported in rice (Cho et al., 2000), sugarcane (Cordeiro et al., 2001), tomato (Areshchenkova and Ganal, 2002), wheat (Eujayl et al., 2002), and barley (Thiel et al., 2003).”
• Population structure and long-range linkage disequilibrium in a durum wheat elite collection (2005, positive): “The suitability of SSR markers for evaluating the genetic relationships in the germplasm of the main crops (Huang et al. 2002; Matsuoka et al. 2002b; Garris et al. 2003; Liu et al. 2003; Thiel et al. 2003), including durum wheat (Eujayl et al. 2002), is well documented.”
• EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliata (2007, methodology): “This EST-based approach to identify SSRs has succeeded in various species for which extensive EST resources exist (Gonzalo et al. 2005; Thiel et al. 2003; Yu et al. 2004).”
• Microsatellite Markers in Plants and Insects. Part I: Applications of Biotechnology (2009, background): “…(Peakall et al. 1998), rice (Zhao and Kochert 1993), wheat (Roder et al. 1995), sorghum and maize (Brown et al. 1996; Cordeiro et al. 2001), barley (Thiel et al. 2003), sugarcane (Selvi et al. 2003), Crotalaria (Wang et al. 2006b); Oat (Fu et al. 2007), Lablab (Wang et al. 2007), Lespedeza (Wang…”
• Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers (2011, methodology): “SSRs were mined in the genome sequence using the MIcroSAtellite ( MISA”