Large-scale analysis of the human and mouse transcriptomes

By Andrew I. Su, M. Cooke, K. Ching, Y. Hakak, J. Walker, T. Wiltshire, A. Orth, Raquel G. Vega, L. Sapinoso, A. Moqrich and 4 more. Proceedings of the National Academy of Sciences of the United States of America, 2002

1,611 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/38d3d59643b4dd5a573fba1cc993fa19d58b44f3

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Citations in the corpus

FABIA: factor analysis for bicluster acquisition (2010, background): “(B) The “multiple tissue types” data set (Su et al., 2002) are gene expression profiles from human and mouse samples across diverse tissues and cell lines aimed at constructing a reference for the mammalian transcriptome.”
A module map showing conditional activity of expression modules in cancer (2004, background): “Module Module (32) Specific tissue, including bone/cartilage (14) Unique to bone/ cartilage (6) Angio associated (13) Angiogenic (8) Bone/cartilage function (31)”
Tissue-Specific Differences in Human Transfer RNA Expression (2006, background): “Varying the abundance of one or more of these protein factors as suggested by results from mRNA expression arrays [1,2] could lead to varying levels of transcription among tRNA genes.”
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data (2003, background): “Figure 2B shows TOP2A’s 10 most correlated neighbours in a dataset of normal tissues and cell lines (14).”
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution (2008, neutral): “First, most variation in evolutionary rates appears to be attributable to regulatory rather than functional differences, and translation, often ignored, may play a central role.”
Coexpression analysis of human genes across many microarray data sets. (2004, neutral): “75 12057 824563 (Staunton et al. 2001) 11 8257 4760 (Garber et al. 2001) 73 9171 258866 (Su et al. 2002) 12 8257 128303 (Golub et al. 1999) 72 5418 52283 (Tezak et al. 2002) 24 12057 12944 (Greenberg et al. 2002) 12 8243 5280 (Unpublished, GSE443) 60 5418 51286 (Gruvberger et al. 2001) 58 2756…”
A genome-wide admixture scan identifies MYH9 as a candidate locus associated with non-diabetic end stage renal disease in African Americans (2008, neutral): “Although many are expressed in the kidney, MYH9 , the gene encoding the nonmuscle myosin heavy chain 9, is the most highly expressed compared to the other 16 known genes in this regio”
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. (2003, methodology): “And because many of the newly identified mitochondrial genes (Figure 3B) lie within these modules, they provide an initial step (A) Pairwise correlation matrix for the 386 mitochondrial genes represented on the GNF mouse tissue compendium (Su et al., 2002).”
Network modeling links breast cancer susceptibility and centrosome dysfunction. (2007, methodology): “Coexpression profiling To initiate our search for genes that are likely to be functionally associated with the reference genes/proteins, we used a data set containing transcript abundance measurements for 9,214 human genes in 101 samples originating from 43 healthy human tissues or organs and thr”
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchies (2004, methodology): “Data from the published, large-scale expression analysis of Su et al is used here to illustrate the use of this tool [18].”