SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

By M. Diehn, Gavin Sherlock, G. Binkley, Heng Jin, J. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Cherry, David Botstein, Patrick O. Brown and 1 more. Nucleic Acids Res., 2003

457 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/e05a9c8be06b28061fe58e201732f22cd8329c45

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Citations in the corpus

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis (2007, methodology): “A couple of other projects, e.g. SOURCE [4], RESOURCER [5], IDconverter [6], BioMart (formerly EnsMart) [7], UCSC Gene Sorter [8], were developed towards being more suitable for high through-put gene-annotation queries.”
ONCOMINE: a cancer microarray database and integrated data-mining platform. (2004, methodology): “Reference Database (HPRD) [44] and SOURCE [45], and the pathway resources Kyoto Encyclopedia of Genes and”
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. (2007, background): “[27] provide a graphical representation of microarray data, but only for a limited number of data sets.”
An abundance of bidirectional promoters in the human genome. (2003, methodology): “By downloading the functional annotation from SOURCE (http:// source.stanford.edu/; Diehn et al. 2003) and comparing the proportion of occurrences of " DNA-repair " in the annotated bidirectional genes to the occurrences in the annotated nonbidirectional genes, we also found that DNA-repair genes…”
Pathways to the analysis of microarray data. (2005, background): “Because there is no single repository for all these identifiers, it can be difficult to cross-reference the information about an enzyme to its corresponding microarray probe ID. Programs such as SOURCE [ 33 ] and Onto-Translate [34] cross-reference various identifiers and accession numbers, but this”
The control of human mesenchymal cell differentiation using nanoscale symmetry and disorder. (2007, background): “)), matrix metallopeptidase 8 (MMP8), collagens (COLs 1, 5 and 7) and osteospecific matrix production, both recognized (OCN) and speculative (arylsulphatase E (ARSE)”
Analysis of Gene Expression Data Using BRB-Array Tools (2007, methodology): “For printed arrays, if the user provides any single identifier such as a clone identifier, a Unigene cluster identifier, a gene symbol, or a Genbank accession number, the program will automatically obtain a wide variety of other gene annotations from the Source database (Diehn et al., 2003).”