Towards the human intestinal microbiota phylogenetic core.

By Julien Tap, S. Mondot, F. Levenez, É. Pelletier, Christophe Caron, J. Furet, Edgardo Ugarte, Rafael Muñoz-Tamayo, D. Paslier, R. Nalin and 2 more. Environmental Microbiology, 2009

912 citations recorded by the source corpus.

Subfields: Food Science, Infectious Diseases, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/2e4854d2698edbddb65782853142e85751f60760

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Food Science

1. H. Flint
2. P. Louis
3. S. Duncan
4. J. Walter
5. G. Holtrop
6. Ruth E. Ley
7. Ted G. Dinan
8. Pauline Young

In Infectious Diseases

1. J. Walter
2. Ruth E. Ley
3. David A. Relman
4. Les Dethlefsen
5. W. D. de Vos
6. Ted G. Dinan
7. H. Flint
8. P. Louis

In Molecular Biology

1. H. Flint
2. P. Louis
3. Ted G. Dinan
4. J. Walter
5. Ruth E. Ley
6. W. D. de Vos
7. David A. Relman
8. S. Duncan

Citations in the corpus

• Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors (2010, background): “Despite tremendous diversity of the gut microbial species, many of which are sparsely distributed between individual hosts, recent work has revealed that a core of >50 taxa are found in nearly half of human subjects sampled (29, 30).”
• Bifidobacteria and Butyrate-Producing Colon Bacteria: Importance and Strategies for Their Stimulation in the Human Gut (2016, background): “Also other disorders, such as inflammatory bowel disease (IBD, encompassing Crohn’s disease and ulcerative colitis), irritable bowel syndrome (IBS), colorectal cancer, and allergies have been linked to changes in the gut microbiota composition (de Vos and de Vos, 2012; Le Chatelier et al., 2013).”
• Intestinal microbiota in human health and disease: the impact of probiotics (2011, background): “Despite the high species richness and inter-individual variability of the intestinal microbiota, a limited number of bacterial phylotypes is more prevalent amongst individuals and might therefore represent a shared phylogenetic core (Qin et al. 2010; Tap et al. 2009).”
• The intestinal microbiota: Antibiotics, colonization resistance, and enteric pathogens (2017, background): “Spectrum (1) Gram + (2) Gram − (3) Anaerobes (1) Gram + (2) Anaerobes (1) Anaerobes (1) Gram − (2) Aerobes (1) Gram + (2) Aerobes”
• Diversity of Bifidobacteria within the Infant Gut Microbiota (2012, background): “The adult human gut microbiota is considered to be more complex than its infant equivalent, while being stable over time and similar between individuals [12,15].”
• Untangling the Genetic Basis of Fibrolytic Specialization by Lachnospiraceae and Ruminococcaceae in Diverse Gut Communities (2013, background): “Lachnospiraceae and Ruminococcaceae are the most abundant Firmicute families in gut environments, accounting for roughly 50% and 30% of phylotypes respectively [6,9].”
• The human gut microbiome: ecology and recent evolutionary changes. (2011, background): “, taxa present in 50% to 90% of individuals surveyed) (70, 92, 108).”
• Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon (2012, background): “…human colonic bacteria in pure culture Four of the most abundant bacterial species found in the human large intestine (based on cultural (Moore and Moore, 1995) and molecular (Tap et al., 2009; Walker et al., 2011) analyses) were chosen as representatives of the major groups of amylolytic bacteria.”