The microRNA Registry

By Sam Griffiths-Jones. Nucleic Acids Res., 2004

2,415 citations recorded by the source corpus.

Subfields: Cancer Research, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/2ca453a0efa8a6628ddfc7a9da233b4a570eab83

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Citations in the corpus

A universal framework for regulatory element discovery across all genomes and data types. (2007, methodology): “miRNAs 420 miRNA sequences, downloaded from miRBase (Griffiths-Jones, 2004) on Oct 19 2006.”
MicroRNAs: new regulators of immune cell development and function (2008, background): “These miRNAs differ in their mature sequence by just two nucleotides at the 3′ end, which suggests that they probably regulate the same group of mRNA target”
Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine (2005, methodology): “The sequences of human pre-miRNAs are downloaded from the miRNA registry database [22-24] in Sept.”
Clustering and conservation patterns of human microRNAs (2005, methodology): “The human miRNA precursors used in the analysis (207 in total), were derived from the miRNA registry release 4.0 (http:// www.sanger.ac.uk/Software/Rfam/mirna/) ( 19 ).”
microRNA Target Predictions across Seven Drosophila Species and Comparison to Mammalian Targets (2005, background): “microRNA precursors and mature microRNAs from the microRNA registry at Rfam [”
MicroRNA expression profiling in prostate cancer. (2007, background): “Antisense oligonucleotide probes for all 319 different human miRNA sequences found from the miRNA database of the Sanger Institute5 ( 34 , 35) in October 2005 were”
Fast and reliable prediction of noncoding RNAs (2005, neutral): “Among the predicted RNAs we can find all known ncRNAs from Rfam [37] and the miRNA registry [39] that are located in the upstream regions of known protein-coding genes.”
Genomics of microRNA. (2006, background): “At the time of writing, the miRNA database (http://www.sanger.ac.uk/Software/Rfam/mirna/ )c ontained 114 Caenorhabditis elegans miRNAs, 78 Drosophila melanogaster miRNAs, 369 Danio rerio miRNAs, 122 Gallus gallus (chicken) miRNAs, 326 Homo sapiens miRNAs and 117 Arabidopsis thaliana miRNAs [ 23 ].”
Genomic Organization, Differential Expression, and Interaction of SQUAMOSA Promoter-Binding-Like Transcription Factors and microRNA156 in Rice1[W] (2006, methodology): “The stem-loop sequences of the plant miR156 family were downloaded from the miRbase (Griffiths-Jones, 2004) to reconstruct the phylogenetic tree.”
Functional diversity of miRNA in plants (2007, neutral): “pl) [5].”
Modulation of microRNA processing and expression through RNA editing by ADAR deaminases (2006, background): “Although we did not find the edited version of miR-142 in the miRNA Registr”
Human MicroRNA Targets (2004, methodology): “…provide web resources, including a viewer for browsing potential target sites, conserved with or without positional constraints, on aligned UTRs, with periodic updates (www.microrna.org), as well as links to these targets from the miRNA registry site RFAM (www.sanger.ac.uk; Griffiths-Jones 2004).”