Elucidation of the Small RNA Component of the Transcriptome

By Cheng Lu, Shivakundan Singh Tej, Shujun J Luo, C. Haudenschild, Blake C. Meyers, Pamela J. Green. Science, 2005

653 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/1f02a6fb1791345e4187fbe22d46b385d9a7119e

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In Plant Science

Citations in the corpus

A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. (2006, methodology): “Locus was reported as a miRNA in Lu et al. (2006). Rajagopalan et al.”
Highly Specific Gene Silencing by Artificial MicroRNAs in Arabidopsis[W][OA] (2006, background): “We have found that amiRNAs efficiently silence both single and multiple target genes, with little evidence for the formation of secondary siRNAs, consistent with the findings for most natural plant miRNAs (Lu et al., 2005).”
Identification and validation of conserved microRNAs along with their differential expression in roots of Vigna unguiculata grown under salt stress (2010, methodology): “This is in agreement with previous results reported in Arabidopsis, rice and Medicago, where a number of miRNAs expressed only in certain tissues and cell types, during specific developmental stages and under stress conditions ( Lu et al. 2005; Sunkar et al. 2007).”
Revisiting the principles of microRNA target recognition and mode of action (2009, background): “It is unlikely, however, that such ncRNAs would function as siRNA sources as in the tasiRNA example, because such siRNAs are extremely rar”
Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome. (2008, background): “Discovery of ta-siRNA Targets Known Arabidopsis secondary small interfering RNA (siRNA)producing loci include four families of TAS genes, a set of PPR genes targeted by multiple miRNAs, trans-acting siRNAs (tasiRNAs), and the cleaved targets of miR393 and miR168 [7, 13, 22, 23].”
Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA (2005, methodology): “The method that led to the development of this dataset is described elsewhere (16), but the display and interpretation of these data required extensive additions to the mRNA MPSS website.”
A two-hit trigger for siRNA biogenesis in plants. (2006, neutral): “Yet the majority of Arabidopsis miRNA targets are cleaved without subsequently initiating the biogenesis of detectable amounts of siRNAs (Lu et al., 2005).”
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes. (2010, background): “Another approach for finding miRNAs and other small RNAs missed in the early discovery efforts is highthroughput sequencing (Lu et al. 2005).”
Regulation of Phosphate Homeostasis by MicroRNA in Arabidopsis[W] (2005, background): “…has been shown to be regulated by development in a tissue-specific manner or in response to a range of environmental stresses (Reinhart et al., 2002; Jones-Rhoades and Bartel, 2004; Sunkar and Zhu, 2004; Adai et al., 2005; Axtell and Bartel, 2005; Lu et al., 2005a, 2005b; Sunkar et al., 2005).”
Metazoan MicroRNAs (2018, background): “Genomics and Evolution of Canonical miRNAs High-throughput sequencing of small RNAs has transformed miRNA gene discovery (Lu et al., 2005; Ruby et al., 2006).”
Post-transcriptional small RNA pathways in plants: mechanisms and regulations. (2006, background): “Viruses also inhibit the miRNA pathway to some extent (Mallory et al. 2002; Kasschau et al. 2003; Chapman et al. 2004; Dunoyer et al. 2004).”