Structure of linkage disequilibrium and phenotypic associations in the maize genome

By David Remington, Jeffry M. Thornsberry, Y. Matsuoka, Larissa M Wilson, S. Whitt, John Doebley, Stephen Kresovich, M. Goodman, E. Buckler. Proceedings of the National Academy of Sciences of the United States of America, 2001

1,192 citations recorded by the source corpus.

Subfields: Genetics

View Paper: https://www.semanticscholar.org/paper/0a417a5b09afa0eda0d037559b5ec8cee1d17e30

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Citations in the corpus

Robust and highly informative microsatellite-based genetic identity kit for potato (2009, background): “…(Spooner et al. 2007); tracing germplasm migrations (Spooner et al. 2005a; Rios et al. 2007); fingerprinting (Moisan-Thiery et al. 2005; Provan et al. 1996; Schneider and Douches 1997); genetic linkage mapping (Ghislain et al. 2001; Feingold et al. 2005); establishment of core…”
Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis (2005, background): “We thankard and Przeworski, 2001; Rosenberg et al., 2002) and, K. McKenzie and K. Moldenhauer for critical reading of thisto a lesser extent, plant genetics (Remington et al., 2001; manuscript.”
REVIEW: PART OF A HIGHLIGHT ON BREEDING STRATEGIES FOR FORAGE AND GRASS IMPROVEMENT Will genomic selection be a practical method for plant breeding? (2012, neutral): “0.1 (Remington et al., 2001; Garris et al., 2003; Palaisa et al., 2003).”
Candidate Genes, Quantitative Trait Loci, and Functional Trait Evolution in Plants (2003, methodology): “In spite of its potential shortcomings, QTL analysis has been and is likely to remain a critical tool for genetic analysis.”
Genome-wide association mapping: a case study in bread wheat (Triticum aestivum L.) (2010, background): “Another advantage is the much finer mapping resolution, resulting in small confidence intervals of the detected loci compared to classical mapping, where the identified loci need to become fine-mapped (Remington et al. 2001).”
Genetic Diversity in CIMMYT Nontemperate Maize Germplasm: Landraces, Open Pollinated Varieties, and Inbred Lines (2008, background): “They will be quite useful as an association mapping panel, because they do not show a distinct population structure and it is likely that linkage disequilibrium will decay rapidly (Remington et al., 2001).”
Structure of linkage disequilibrium in plants. (2003, methodology): “LD was also measured between 47 microsatellite markers to estimate LD across the genome (48).”
Linkage disequilibrium and association studies in higher plants: Present status and future prospects (2005, methodology): “Labate et al. (2000) LD across the genome measured through LD among 47 SSRs. High LD was observed, suggesting that SSRs may track recent population structure better than the relatively older SNPs. Remington et al. (2001) Pattern of variation at 21 loci; impact of selection , recombination, and LD on”
Genomic Selection for Crop Improvement (2017, neutral): “…kb in a diversity panel of rice (Oryza sativa; Mather et al., 2007), 10 to 20 cM (roughly 50–100 Mb) in elite cultivars of wheat (Triticum aestivum; Chao, 2007; Maccaferri et al., 2005), 0.1 to 1.5 kb in diverse inbred lines of maize (Zea mays ssp. mays; Remington et al., 2001; Tenaillon Figure 1.”
Genetic Diversity Determined within and among CIMMYT Maize Populations of Tropical, Subtropical, and Temperate Germplasm by SSR Markers (2004, result): “In contrast to these results, Thus, experimental errors are probably the major Remington et al. (2001) reported evidence of genomecause of heterozygote deficiency within the populations wide LD among 47 SSRs for 102 maize inbred lines apart from genuine genetic causes.”