Structure of linkage disequilibrium in plants.

By Sherry Flint-Garcia, Jeffry M. Thornsberry, Edward S. Buckler. Annual Review of Plant Biology, 2003

1,634 citations recorded by the source corpus.

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Citations in the corpus

Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.) (2010, background): “LD is defined as the nonrandom association of alleles at different loci in a population (Flint-Garcia et al. 2003).”
Association mapping for Fusarium head blight resistance in European soft winter wheat (2011, background): “Despite the potential of association mapping to unravel the genetic architecture of complex traits ( Flint-Garcia et al. 2003 ), a genomewide scan for marker‐FHB resistance associations has not yet been conducted.”
Association mapping of leaf rust response in durum wheat (2009, background): “…mapping on germplasm collections has been introduced to discover new useful allelic variation through genome-wide scan and/or to validate the effect of genes/QTLs previously discovered by traditional mapping (Rafalski 2002; Flint-Garcia et al. 2003; Gupta et al. 2005; Waugh et al. 2009).”
Maize association population: a high-resolution platform for quantitative trait locus dissection. (2005, background): “Association analysis has been employed only recently in plants, with initial resistance due in large part to the confounding effects of population structure and the general lack of knowledge regarding the structure of LD in many plant species (reviewed by Flint-Garcia et al., 2003 ).”
Marker-Assisted Plant Breeding: Principles and Practices (2015, background): “measure only recombination history, while those of r(2) reflect both mutation and recombination histories (Flint-Garcia 2003).”
Genetic diversity, linkage disequilibrium, and association mapping analyses of peach (Prunus persica) landraces in China (2012, background): “Many important crops have complex population structures that arose from a long domestication and breeding history (Flint-Garcia et al. 2003).”
An association mapping approach to identify flowering time genes in natural populations of Lolium perenne (L.) (2005, background): “2003), but there is an increasing realisation that association mapping based on linkage disequilibrium could have a significant part to play in crop plants for dissecting quantitative trait loci, and provide useful haplotypes for marker assisted selection (MAS) and introgression (Flint-Garcia et al.”
Association Mapping in Plant Genomes (2012, background): “Linkage refers to the correlated inheritance of loci through the physical connection on a chromosome, whereas LD refers to the correlation between alleles in a population (Flint-Garcia et al., 2003).”
Genomic selection for durable stem rust resistance in wheat (2011, background): “The minimum number of markers to achieve genome-wide coverage therefore depends on LD decay rates which vary widely across species, populations, and genomes due to forces of mutation, recombination, population size, population mating patterns, and admixture ( Flint-Garcia et al. 2003 ).”
Linkage disequilibrium, genetic association mapping and gene localization in crop plants (2008, background): “Genome-wide scans with RFLP loci showed a decay of LD to values of r2 0.05 within 10 cM in sugarcane (Flint-Garcia et al., 2003) and within 50 cM in sorghum (Hamblin et al., 2004).”
Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis (2005, background): “…clus- gene discovery but will only be efficient if population tering approach in which each group or population is structure is taken into account (Flint-Garcia et al., 2003). characterized by a set of allele frequencies at each locus along with the likelihood for each K (number of groups).”
Status and Prospects of Association Mapping in Plants (2008, background): “Choice of germplasm is critical to the success of association analysis (Breseghello and Sorrells, 2006a; Flint-Garcia et al., 2003; Yu et al., 2006).”
Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives (2008, methodology): “A variety of statistics have been used to measure LD for diVerent purposes with the two most common being r2 and D (Flint-Garcia et al. 2003).”
Genetic Diversity, Population Structure, and Linkage Disequilibrium in U.S. Elite Winter Wheat (2010, background): “118 THE PLANT GENOME SEPTEMBER 2010 VOL. 3, NO. 2 breeding are mostly determined by LD, the nonrandom association of alleles at diff erent loci (Flint-Garcia et al., 2003; Kim et al., 2007).”
Overview and Application of QTL for Adult Plant Resistance to Leaf Rust and Powdery Mildew in Wheat (2014, background): “Association analysis, also known as linkage disequilibrium (LD) mapping or association mapping, allows correlation analyses between traits and molecular markers based on LD (Flint-Garcia et al., 2003).”