Linkage disequilibrium and association studies in higher plants: Present status and future prospects

By Pankaj Kumar Gupta, S. Rustgi, P. Kulwal. Plant Molecular Biology, 2005

660 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/c07c539d6b84b92a0aa8b7f4780a2b2566f00c76

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

In Plant Science

Citations in the corpus

Association mapping of leaf rust response in durum wheat (2009, background): “…mapping on germplasm collections has been introduced to discover new useful allelic variation through genome-wide scan and/or to validate the effect of genes/QTLs previously discovered by traditional mapping (Rafalski 2002; Flint-Garcia et al. 2003; Gupta et al. 2005; Waugh et al. 2009).”
Association mapping of yield and its components in rice cultivars (2007, methodology): “between all the alleles at two loci (Gupta et al. 2005).”
The genetic dissection of quantitative traits in crops (2010, methodology): “These methods have been described in different reviews (Jorde, 2000; Flint-Garcia et al. 2003; Gaut and Long, 2003; Gupta et al. 2005; Mackay and Powell, 2007).”
Association analysis using SSR markers to find QTL for seed protein content in soybean (2008, methodology): “The fundamental idea of a population-based method is to separate accessions obtained from a mixed population into several unstructured subpopulations and to determine the association between marker alleles and phenotypes in the homogeneous subpopulations (Prichard et al. 2000b; Gupta et al. 2005).”
REVIEW: PART OF A HIGHLIGHT ON BREEDING STRATEGIES FOR FORAGE AND GRASS IMPROVEMENT Will genomic selection be a practical method for plant breeding? (2012, background): “1) is found to be greater in outcrossing species than selfing species, although it varies with different species, population structure and genome regions (Gupta et al., 2005).”
Prospects for genomic selection in conifer breeding: a simulation study of Cryptomeria japonica (2011, background): “genomes (Gupta et al. 2005) because of its extremely large genome size (>5.”
Association Mapping in Plant Genomes (2012, background): “Earlier publications are summarized elsewhere (Gupta et al., 2005; Zhu et al., 2008).”
Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. (2006, background): “Lastly, there are many ecological questions that can benefit from the study of linked loci ( Gupta et al. 2005 ).”
SNP Discovery through Next-Generation Sequencing and Its Applications (2012, background): “In general, GWASs require 10,000–100,000 markers applied to a collection of genotypes representing a broad genetic basis [130].”
Genotyping a large collection of pepper (Capsicum spp.) with SSR loci brings new evidence for the wild origin of cultivated C. annuum and the structuring of genetic diversity by human selection of cultivar types (2013, background): “a minimal redundancy (Marita et al. 2000; Gupta et al. 2005; Zhu et al. 2008).”
Association mapping of quality traits in potato (Solanum tuberosum L.) (2008, background): “approach in plants has been published recently (Gupta et al. 2005).”
Genetic diversity, linkage disequilibrium, and association mapping analyses of peach (Prunus persica) landraces in China (2012, background): “Mapping populations examined for this purpose are also sometimes too small (Pushpendra et al. 2005).”
Marker-assisted selection: an approach for precision plant breeding in the twenty-first century (2008, background): “SNPs within candidate genes could be extremely useful for ‘association mapping’ and ultimately MAS (Rafalski 2002; Flint-Garcia et al. 2003a; Gupta et al. 2005; Breseghello & Sorrells 2006).”
Plant Genetic Resources Conservation and Utilization: The Accomplishments and Future of a Societal Insurance Policy (2006, background): “Such abundance of molecular markers can also be used to conduct association mapping studies to locate genes underlying agronomic traits as an alternative to quantitative trait locus mapping (Gupta et al., 2005).”
Linkage disequilibrium, genetic association mapping and gene localization in crop plants (2008, background): “The factors affecting LD have been extensively discussed in a number of papers (Ardlie et al., 2002; Jannink and Walsh, 2002; Weiss and Clark, 2002; Flint-Garcia et al., 2003; Gaut and Long, 2003; Gupta et al., 2005; Kim et al., 2007), and were also recently listed by Rafalski and Morgante (2004).”