Population structure and breeding patterns of 145 U.S. rice cultivars based on SSR marker analysis

By Hong Lu, M. Redus, J. Coburn, J. Rutger, Susan McCouch, T. Tai. 2005

183 citations recorded by the source corpus.

Subfields: Genetics, Plant Science

View Paper: https://www.semanticscholar.org/paper/5e32568827013cbca6c6521806b196a3e26e7e31

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Genetics

1. G. Eizenga
2. H. Agrama
3. M. Sorrells
4. M. Thomson
5. S. Chao
6. A. McClung
7. J. Dubcovsky
8. F. Breseghello

In Plant Science

1. G. Eizenga
2. M. Sorrells
3. H. Agrama
4. M. Thomson
5. S. Chao
6. Wenjun Zhang
7. A. McClung
8. J. Dubcovsky

Citations in the corpus

• Molecular diversity and genome-wide linkage disequilibrium patterns in a worldwide collection of Oryza sativa and its wild relatives (2008, methodology): “SSR markers have been widely used in rice (Oryza sativa L.) germplasm evaluation for both international (Ishii and McCouch 2000; Ishii et al. 2001; Semon et al. 2005; Thomson et al. 2007) and domestic US (Ni et al. 2002; Lu et al. 2005) collections.”
• SSR marker-based molecular characterization and genetic diversity analysis of aromatic landreces of rice (Oryza sativa L.) (2012, result): “In the present study, the level of polymorphism determined by the PIC value (mean= 0.48) is consistent with the reported PIC value in previous works (Lu et al., 2005; Wong et al., 2009; Hossain et al., 2012).”
• Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa (2007, background): “varieties (Dilday 1990; Lu et al. 2004 ) they tend to be genetically more similar than either is to O. rufipogon, making it theoretically less likely to identify transgressive segregants among the offspring.”
• Genetic Mapping of Sheath Blight Resistance QTLs within Tropical Japonica Rice Cultivars (2009, methodology): “Independent genetic distance analyses of SSR loci (Garris et al., 2005; Lu et al., 2005) indicate that Pecos and its progenitors (Gulfrose, ‘Rexark Rogue’, and Tainan Iku 487; Bollich et 260 WWW.CROPS.ORG CROP SCIENCE, VOL. 49, JANUARY–FEBRUARY 2009 al., 1985) are grouped within japonica germplasm,…”
• Waxy gene haplotypes associations with pasting properties in an international rice germplasm collection (2008, background): “It is clustered into three groups: temperate japonica with short tomedium grains, tropical japonicawith medium grains, and tropical japonica with long grains (Lu et al., 2005).”
• Association Analysis as a Strategy for Improvement of Quantitative Traits in Plants (2006, background): “Scientific plant breeding is a recent activity that normallyinvolvesanarrowgeneticpool,suchthatbreeding populations can be traced back to relatively few original parents, normally landraces, within a relatively small number of generations (e.g., Bered et al., 2002; Lu et al., 2005 ).”
• Association mapping of quality traits in potato (Solanum tuberosum L.) (2008, background): “In plant genetics, however, fewer papers have been produced so far on association mapping, except for model plant systems like Arabidopsis thaliana (Hagenblad and Nordborg 2002; Nordborg et al. 2002), maize (Ching et al. 2002; Palaisa et al. 2003, 2004; Parisseaux and Bernardo 2004; Rafalski and Mor”
• A Rice Diversity Panel Evaluated for Genetic and Agro‐Morphological Diversity between Subpopulations and its Geographic Distribution (2011, background): “Lu et al. (2005) and Qi et al. (2009) reported similar patterns of genetic diversity, with more alleles in indica cultivars than in japonica cultivars.”
• Evaluation of Genetic Diversity and Genome‐wide Linkage Disequilibrium among U.S. Wheat (Triticum aestivum L.) Germplasm Representing Different Market Classes (2007, result): “However, the distance-based results were found to correspond better to the pedigree data among 115 U.S. rice cultivars (Lu et al., 2005).”
• Association mapping of yield and its components in rice cultivars (2007, methodology): “with the same ABI 3700 DNA analyzer (Lu et al. 2005), was included for comparison.”
• Association Mapping of Kernel Size and Milling Quality in Wheat (Triticum aestivum L.) Cultivars (2006, background): “Lu et al. (2005) found, on average, 5.15 alleles per locus within a group of 136 elite japonica rice cultivars, or 6.57 alleles if nine indica varieties were included.”