Jüergen Cox

Molecular Biology · 2007–2018

A researcher in the Science corpus: 25 papers; trusts 49 researchers and is trusted by 54 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 390 citations into it; #391 of 17,773 by trust here, #726 by citations
• Spectroscopy — 252 citations into it; #17 of 1,674 by trust here, #22 by citations
• Cancer Research — 35 citations into it
• Cell Biology — 22 citations into it
• Food Science — 8 citations into it
• Computational Mechanics — 7 citations into it
• Evaluation & Benchmarks — 5 citations into it

Whom Jüergen Cox trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Matthias Mann
2. Shao-En Ong
3. R. Aebersold
4. Jesper V. Olsen
5. Hanno Steen
6. Juri Rappsilber
7. Yoav Benjamini
8. Marcus Bantscheff
9. I. Kratchmarova
10. Joshua E. Elias

Who trusts Jüergen Cox overall

1. Matthias Mann
2. Stefka Tyanova
3. Philipp E. Geyer
4. M. Larance
5. T. Geiger
6. Christoph Schaab
7. K. Sharma
8. Mikhail M. Savitski
9. Nagarjuna Nagaraj
10. B. Budnik

Papers from Jüergen Cox's perspective

Ordered by how strongly the researchers Jüergen Cox trusts endorse each paper. Same corpus, a different order for every researcher.

1. Mass spectrometry-based proteomics (Nature)
2. Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* (Molecular & Cellular Proteomics)
3. A statistical model for identifying proteins by tandem mass spectrometry.
4. Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues*S (Molecular & Cellular Proteomics)
5. Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics (Cell)
6. The International Protein Index: An integrated database for proteomics experiments (Proteomics)
7. Andromeda: a peptide search engine integrated into the MaxQuant environment. (Journal of Proteome Research)
8. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells (Nature Biotechnology)
9. Quantitative mass spectrometry in proteomics: a critical review (Analytical and Bioanalytical Chemistry)
10. Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. (Analytical Chemistry)

Their papers

• MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification (2008) — 14,691 citations
• Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast (2008) — 926 citations
• Andromeda: a peptide search engine integrated into the MaxQuant environment. (2011) — 5,450 citations
• More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. (2011) — 677 citations
• Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ (2014) — 4,442 citations
• A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (2015) — 1,214 citations
• Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database (2012) — 157 citations
• The PRIDE database and related tools and resources in 2019: improving support for quantification data (2018) — 6,119 citations
• Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry (2016) — 643 citations
• Deep proteome and transcriptome mapping of a human cancer cell line (2011) — 991 citations
• Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins (2012) — 742 citations
• Quantitative, high-resolution proteomics for data-driven systems biology. (2011) — 723 citations
• PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites (2007) — 479 citations
• Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling. (2014) — 925 citations
• Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer (2011) — 755 citations
• 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data (2012) — 577 citations
• The Perseus computational platform for comprehensive analysis of (prote)omics data (2016) — 7,439 citations
• The MaxQuant computational platform for mass spectrometry-based shotgun proteomics (2016) — 4,240 citations
• Quantitative proteomics reveals subset-specific viral recognition in dendritic cells. (2010) — 595 citations
• A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards (2014) — 607 citations