Andreas Gnirke

Molecular Biology · 2005–2017

A researcher in the Science corpus: 24 papers; trusts 6 researchers and is trusted by 8 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 286 citations into it; #5,633 of 17,773 by trust here, #268 by citations
• Genetics — 83 citations into it; #6,389 of 6,854 by trust here, #2,249 by citations
• Evaluation & Benchmarks — 5 citations into it

Whom Andreas Gnirke trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. A. Bird
2. Peter W. Laird
3. Yoav Benjamini

Who trusts Andreas Gnirke overall

1. B. Faircloth
2. E. Lemmon
3. Peter W. Laird
4. R. Ekblom
5. Sriram Kosuri
6. Alan R. Lemmon
7. Hao Wu
8. Jun Zhang
9. Yongseok Park
10. Lin Liu

Papers from Andreas Gnirke's perspective

Ordered by how strongly the researchers Andreas Gnirke trusts endorse each paper. Same corpus, a different order for every researcher.

1. Epigenetic Reprogramming in Mammalian Development (Science)
2. Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1 (Science)
3. Controlling the false discovery rate: a practical and powerful approach to multiple testing
4. BLAT--the BLAST-like alignment tool. (Genome Research)
5. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
6. Early detection: The power and the promise of DNA methylation markers (Nature Reviews. Cancer)
7. The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain (Science)
8. Role of Tet proteins in 5mC to 5hmC conversion, ES cell self-renewal, and ICM specification (Nature)
9. Genome sequencing in microfabricated high-density picolitre reactors (Nature)
10. Mapping and quantifying mammalian transcriptomes by RNA-Seq (Nature Methods)

Their papers

• High-quality draft assemblies of mammalian genomes from massively parallel sequence data (2010) — 1,617 citations
• Genome-scale DNA methylation maps of pluripotent and differentiated cells (2008) — 2,609 citations
• Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs (2010) — 1,265 citations
• Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries (2011) — 1,169 citations
• Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells (2013) — 1,193 citations
• Comprehensive comparative analysis of strand-specific RNA sequencing methods (2010) — 781 citations
• Comprehensive mapping of long range interactions reveals folding principles of the human genome (2009) — 8,189 citations
• Solution Hybrid Selection with Ultra-long Oligonucleotides for Massively Parallel Targeted Sequencing (2009) — 1,475 citations
• Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications (2010) — 719 citations
• Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data (2011) — 17,679 citations
• Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes (2015) — 1,602 citations
• Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells (2011) — 591 citations
• A unique regulatory phase of DNA methylation in the early mammalian embryo (2012) — 985 citations
• Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines (2011) — 1,001 citations
• Charting a dynamic DNA methylation landscape of the human genome (2013) — 1,316 citations
• Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis (2005) — 1,167 citations
• Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis (2006) — 1,189 citations
• Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts (2009) — 4,613 citations
• Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling (2011) — 694 citations
• The genome of the model beetle and pest Tribolium castaneum (2008) — 1,375 citations