Michael L. Tress

Molecular Biology · 2007–2022

A researcher in the Science corpus: 12 papers; trusts 1 researcher and is trusted by 8 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 285 citations into it; #5,285 of 17,773 by trust here, #813 by citations
• Computational Biology & Bioinformatics — 28 citations into it
• Materials Chemistry — 12 citations into it; #3,103 of 11,513 by trust here, #7,093 by citations

Whom Michael L. Tress trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Adam T. Zemla

Who trusts Michael L. Tress overall

1. Pietro Di Lena

Papers from Michael L. Tress's perspective

Ordered by how strongly the researchers Michael L. Tress trusts endorse each paper. Same corpus, a different order for every researcher.

1. The Pfam protein families database
2. Basic local alignment search tool.
3. Protein data bank
4. Binding MOAD, a high-quality protein–ligand database
5. ChEMBL: a large-scale bioactivity database for drug discovery
6. The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data (Nucleic Acids Res.)
7. BioLiP: a semi-manually curated database for biologically relevant ligand–protein interactions
8. PDBe: Protein Data Bank in Europe
9. Genes involved in matrix formation in Pseudomonas aeruginosa PA14 biofilms (Molecular Microbiology)
10. The Pfam protein families database

Their papers

• Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8 (2009) — 76 citations
• GENCODE: The reference human genome annotation for The ENCODE Project (2012) — 4,487 citations
• Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) — 5,374 citations
• Domain definition and target classification for CASP7 (2007) — 28 citations
• firestar—advances in the prediction of functionally important residues (2011) — 61 citations
• FireDB: a compendium of biological and pharmacologically relevant ligands (2013) — 25 citations
• GENCODE reference annotation for the human and mouse genomes (2018) — 2,759 citations
• SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification (2017) — 376 citations
• The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens (2019) — 434 citations
• A User's Guide to the Encyclopedia of DNA Elements (ENCODE) (2011) — 1,042 citations
• GENCODE: reference annotation for the human and mouse genomes in 2023 (2022) — 412 citations
• GENCODE 2021 (2020) — 1,026 citations