Domain definition and target classification for CASP7
By Neil D. Clarke, Iakes Ezkurdia, Jürgen Kopp, Randy J. Read, Torsten Schwede, Michael L. Tress. 2007
28 citations recorded by the source corpus.
Subfields: Materials Chemistry, Molecular Biology
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Materials Chemistry
- Torsten Schwede
- Chaok Seok
- Andriy Kryshtafovych
- Hahnbeom Park
- Gaetano T. Montelione
- Yuanpeng Janet Huang
- J. Haas
- Binchen Mao
In Molecular Biology
- Torsten Schwede
- Andriy Kryshtafovych
- Chaok Seok
- Gaetano T. Montelione
- Hahnbeom Park
- Yuanpeng Janet Huang
- J. Haas
- Yang Zhang
Citations in the corpus
- lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests (2013, methodology): “To avoid this, variable regions of the ensemble are often excluded from the assessment (Clarke et al., 2007; Kinch et al., 2011; Mao et al., 2011).”
- Refinement of unreliable local regions in template‐based protein models (2012, methodology): “For a model with GDT-TS 5 80, which is a rough boundary to define high-accuracy TBM targets in previous CASPs,38,39 q-cut becomes 2.6 A˚.”
- Assessment of template based protein structure predictions in CASP10 (2014, methodology): “Following the process used in CASP7 through CASP9,31–33 targets were first split into assessment units (AUs) and assigned to either the “FM” or “TBM” assessment groups, as outlined in the accompanying article by Taylor et al .17 The TBM AUs ranged in size from 24 residues (T0709-D1) to 498 residues…”
- RPF: a quality assessment tool for protein NMR structures (2012, methodology): “The GDT_TS score has been developed as a local–global alignment method for structure comparison, and has been extensively used for assessing the accuracy of protein structure predictions in CASP assessments (17).”
- Assessment of template based protein structure predictions in CASP9 (2011, methodology): “The global distance test (GDT) is a classical measure in CASP, counting the largest set of amino acid residues’ C a positions in the prediction within certain distance cutoffs from their position in a global superposition with the experimental reference structure.”