Michael D. Tyka
Molecular Biology · 2007–2017
A researcher in the Science corpus: 16 papers; trusts 13 researchers and is trusted by 41 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 199 citations into it; #953 of 17,773 by trust here, #784 by citations
- Materials Chemistry — 133 citations into it; #710 of 11,513 by trust here, #1,719 by citations
- Computational Biology & Bioinformatics — 46 citations into it; #394 of 660 by trust here, #157 by citations
- Spectroscopy — 14 citations into it; #135 of 1,674 by trust here, #142 by citations
- Artificial Intelligence — 7 citations into it
Whom Michael D. Tyka trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- David Baker
- Carol A. Rohl
- Philip Bradley
- Roland L. Dunbrack
- Rhiju Das
- Kira M. S. Misura
- Charles E.M. Strauss
- M. Bower
- Hadley Wickham
- Daniel J. Mandell
Who trusts Michael D. Tyka overall
- Hahnbeom Park
- David Baker
- Sergey Ovchinnikov
- Frank DiMaio
- Pablo Gainza
- David E. Kim
- Julia Koehler Leman
- Enrique Marcos
- Namrata Anand
- Santrupti Nerli
Papers from Michael D. Tyka's perspective
Ordered by how strongly the researchers Michael D. Tyka trusts endorse each paper. Same corpus, a different order for every researcher.
- Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.
- Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.
- Alternate states of proteins revealed by detailed energy landscape mapping
- Atomic accuracy in predicting and designing non-canonical RNA structure
- Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@home
- Modeling structurally variable regions in homologous proteins with rosetta
- 3D-Jury: A Simple Approach to Improve Protein Structure Predictions (Bioinform.)
- Exploring protein native states and large‐scale conformational changes with a modified generalized born model (Proteins: Structure, Function, and Bioinformatics)
- Predicting protein structures with a multiplayer online game
- Algorithms for minimization without derivatives
Their papers
- Inceptionism: Going Deeper into Neural Networks (2015) — 838 citations
- Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules (2011) — 1,780 citations
- Structure prediction for CASP8 with all-atom refinement using Rosetta (2009) — 496 citations
- Structure prediction for CASP7 targets using extensive all‐atom refinement with Rosetta@home (2007) — 222 citations
- Alternate states of proteins revealed by detailed energy landscape mapping (2010) — 405 citations
- Relaxation of backbone bond geometry improves protein energy landscape modeling (2014) — 399 citations
- Efficient Sampling of Protein Conformational Space Using Fast Loop Building and Batch Minimization on Highly Parallel Computers (2012) — 43 citations
- NMR Structure Determination for Larger Proteins Using Backbone-Only Data (2010) — 280 citations
- Structure guided forcefield optimization (2011) — 48 citations
- Scientific Benchmarks for Guiding Macromolecular Energy Function Improvement (2013) — 199 citations
- A Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta (2015) — 233 citations
- AbDesign: an algorithm for combinatorial backbone design guided by natural conformations and sequences (2015) — 118 citations
- Improving physical realism, stereochemistry and side-chain accuracy in homology modeling: four approaches that performed well in CASP8 (2009) — 543 citations
- Principles for computational design of binding antibodies (2017) — 136 citations
- Algorithm discovery by protein folding game players (2011) — 554 citations
- Refinement of Protein Structures into Low-Resolution Density Maps using Rosetta (2009)