3D-Jury: A Simple Approach to Improve Protein Structure Predictions
By Krzysztof Ginalski, Arne Elofsson, Daniel Fischer, Leszek Rychlewski. Bioinform., 2003
755 citations recorded by the source corpus.
Subfields: Materials Chemistry, Molecular Biology
View Paper: https://www.semanticscholar.org/paper/f568c2417d5b17b128fa29b02dbfa591966c7d99
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Materials Chemistry
- Yang Zhang
- Torsten Schwede
- Andrej Sali
- David Baker
- Liam J. McGuffin
- Ben M. Webb
- Jianlin Cheng
- Andriy Kryshtafovych
In Molecular Biology
- Yang Zhang
- Torsten Schwede
- David Baker
- Liam J. McGuffin
- Andrej Sali
- Jinbo Xu
- Björn Wallner
- Arne Elofsson
Citations in the corpus
- MUSTER: Improving protein sequence profile–profile alignments by using multiple sources of structure information (2008, methodology): “31,32,34,64 In a recent local meta-server development, we show that the performance of PPA is comparable to the best single threading algorithms used in LOMETS30 which includes FUGUE,15 HHSEARCH,18 PROSPECT2,23 SAM-T02,65SPARKS2,13 SP3,14 PAINT,30 although the template libraries used in these…”
- Automated Protein Structure Modeling with SWISS-MODEL Workspace and the Protein Model Portal (2012, background): “In other words, regions of the protein which are consistently predicted to be similar by different independent methods are considered more likely to be correct (57).”
- QMEAN: A comprehensive scoring function for model quality assessment (2008, methodology): “48 Alternatively, consensus information can be extracted by analyzing the density distribution in the model conformational space as described in self-RAPDF49 or by biasing an energy function towards one of the most frequent models, for example, in the colony energy approach.”
- ProQ3: Improved model quality assessments using Rosetta energy terms (2016, background): “Availability: ProQ3 is freely available on BitBucket at https://bitbucket.org/ElofssonLab/proq3 Contact: arne@bioinfo.se”
- Toward the solution of the protein structure prediction problem (2021, methodology): “Furthermore, meta-threading approaches such as 3D-Jury (97) and, more recently, LOMETS (98, 99) combine the templates output by multiple threading programs into a set of consensus templates.”
- Progress and challenges in protein structure prediction. (2008, background): “This naturally leads to the prevalence of the so-called metaserver [25,26 ,27], which collects and combines results from a set of different threading programs.”
- The utility of comparative models and the local model quality for protein crystal structure determination by Molecular Replacement (2012, methodology): “Then, a 3D-Jury [27] procedure is executed for the 15% of top-ranked models.”