R. Bernardi
Molecular Biology · with Melo · 2014–2020
A researcher in the Science corpus: 2 papers; trusts 12 researchers and is trusted by 0 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 45 citations into it
- Atomic and Molecular Physics, and Optics — 32 citations into it
- Spectroscopy — 7 citations into it
- Statistical and Nonlinear Physics — 7 citations into it
- Computational Theory and Mathematics — 5 citations into it
Whom R. Bernardi trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- S. Parasuraman
- Alessandro Laio
- Eric F Darve
- Hans Senn
- Jacob D. Durrant
- Y. Xiang
- Andrew Pohorille
- Michele Parrinello
- James Andrew McCammon
- Walter Thiel
Papers from R. Bernardi's perspective
Ordered by how strongly the researchers R. Bernardi trusts endorse each paper. Same corpus, a different order for every researcher.
- Multidimensional replica-exchange method for free-energy calculations
- Accelerating molecular modeling applications with graphics processors (Journal of Computational Chemistry)
- Electrostatics of nanosystems: Application to microtubules and the ribosome (Proceedings of the National Academy of Sciences of the United States of America)
- Good practices in free-energy calculations. (Journal of Physical Chemistry B)
- All-atom empirical potential for molecular modeling and dynamics studies of proteins.
- Calculating free energies using average force
- Canonical sampling through velocity rescaling. (Journal of Chemical Physics)
- Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes
- CHARMM‐GUI: A web‐based graphical user interface for CHARMM
- Canonical dynamics: Equilibrium phase-space distributions.
Their papers
- Scalable molecular dynamics on CPU and GPU architectures with NAMD. (2020) — 2,675 citations
- Enhanced Sampling Techniques in Molecular Dynamics Simulations of Biological Systems (2014) — 683 citations