Electrostatics of nanosystems: Application to microtubules and the ribosome

By Nathan A. Baker, D. Sept, S. Joseph, M. Holst, James Andrew McCammon. Proceedings of the National Academy of Sciences of the United States of America, 2001

7,254 citations recorded by the source corpus.

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

UCSF ChimeraX: Meeting modern challenges in visualization and analysis (2018, methodology): “Many capabilities from the predecessor Chimera are being ported to ChimeraX, including interfaces to web services such as for calculating electrostatic potential (APBS 44 ), ligand docking (AutoDock Vina 45 ), comparative modeling (Modeller 46 ), and multiple sequence alignment (Clustal Omega 47 ).”
An EB1-binding motif acts as a microtubule tip localization signal. (2009, neutral): “lations were performed in PyMOL with the APBS plug-in ( Baker et al., 2001 ).”
Integrative NMR for biomolecular research (2016, positive): “The NMRFAM Virtual Machine is recommended for non-specialists, because it contains pre-installed versions of scientific software packages developed by NMRFAM and elsewhere, including NMRFAM-SPARKY, Ponderosa Client, Ponderosa Analyzer, Ponderosa VI, and PyMOL along with its Adaptive Poisson-Boltzman”
Biochemical and Structural Analysis of Common Cancer-Associated KRAS Mutations (2015, methodology): “Images were prepared using the Pymol APBS tools plugin (41).”
Crystal structure of an Fe-S cluster-containing fumarate hydratase enzyme from Leishmania major reveals a unique protein fold (2016, methodology): “The electrostatic surface potentials were calculated using the Adaptive Poisson-Boltzmann Solver (29) plugin implemented in PyMol, using default parameters.”