Andrew Pohorille

Molecular Biology · 2001–2014

A researcher in the Science corpus: 7 papers; trusts 3 researchers and is trusted by 26 researchers here, as inferred from the citation graph.

Subfields

• Molecular Biology — 14 citations into it; #1,695 of 17,773 by trust here, #7,298 by citations
• Atomic and Molecular Physics, and Optics — 13 citations into it; #403 of 7,135 by trust here, #1,928 by citations
• Statistical and Nonlinear Physics — 5 citations into it; #1,301 of 10,127 by trust here, #2,074 by citations

Whom Andrew Pohorille trusts overall

Their strongest outbound trust, strongest first, inferred from their citations.

1. Eric F Darve
2. W. L. Jorgensen
3. Berend Smit

Who trusts Andrew Pohorille overall

1. James C. Gumbart
2. J'erome H'enin
3. P. Talkner
4. Cameron F. Abrams
5. Pavel V. Klimovich
6. ST John
7. James C. Phillips
8. Jeffrey Comer
9. Michael R. Shirts
10. Giovanni Bussi

Papers from Andrew Pohorille's perspective

Ordered by how strongly the researchers Andrew Pohorille trusts endorse each paper. Same corpus, a different order for every researcher.

1. Calculating Free Energies Using a Scaled-Force Molecular Dynamics Algorithm
2. Good practices in free-energy calculations. (Journal of Physical Chemistry B)
3. Adaptive biasing force method for scalar and vector free energy calculations. (Journal of Chemical Physics)
4. Using collective variables to drive molecular dynamics simulations
5. CHARMM‐GUI: A web‐based graphical user interface for CHARMM
6. On the Compression of Low Rank Matrices (SIAM Journal on Scientific Computing)
7. A kernel-independent adaptive fast multipole algorithm in two and three dimensions
8. Numerical Linear Algebra
9. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
10. Handbook of Mathematical Functions.

Their papers

• Calculating free energies using average force (2001) — 967 citations
• Adaptive biasing force method for scalar and vector free energy calculations. (2008) — 776 citations
• Calculating Free Energies Using a Scaled-Force Molecular Dynamics Algorithm (2002) — 148 citations
• Insights into the recognition and association of transmembrane α-helices. The free energy of α-helix dimerization in glycophorin A (2005) — 132 citations
• The Adaptive Biasing Force Method: Everything You Always Wanted To Know but Were Afraid To Ask (2014) — 437 citations
• Good practices in free-energy calculations. (2010) — 586 citations
• Free energy calculations : theory and applications in chemistry and biology (2007) — 488 citations