Alexandre Urzhumtsev
Materials Chemistry · 1984–2019
A researcher in the Science corpus: 19 papers; trusts 23 researchers and is trusted by 19 researchers here, as inferred from the citation graph.
Subfields
- Materials Chemistry — 155 citations into it; #857 of 11,513 by trust here, #2,435 by citations
- Molecular Biology — 139 citations into it; #4,826 of 17,773 by trust here, #4,409 by citations
- Computational Biology & Bioinformatics — 55 citations into it; #355 of 660 by trust here, #179 by citations
- Structural Biology — 40 citations into it; #214 of 224 by trust here, #26 by citations
- Surfaces, Coatings and Films — 22 citations into it; #672 of 752 by trust here, #500 by citations
- Computational Chemistry & Drug Discovery — 21 citations into it
- Computational Theory and Mathematics — 17 citations into it
- Physical and Theoretical Chemistry — 15 citations into it
Whom Alexandre Urzhumtsev trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- A. Brunger
- Vladimir Y. Lunin
- Randy J. Read
- R. Grosse-Kunstleve
- Pavel V. Afonine
- G. Sheldrick
- Navraj S. Pannu
- Helen M. Berman
- Paul D. Adams
- G. Murshudov
Who trusts Alexandre Urzhumtsev overall
- Pavel V. Afonine
- Paul D. Adams
- D. Liebschner
- Nigel W. Moriarty
- T. C. Terwilliger
- M. Mustyakimov
- O. Sobolev
- R. Grosse-Kunstleve
- Vladimir Y. Lunin
- Randy J. Read
Papers from Alexandre Urzhumtsev's perspective
Ordered by how strongly the researchers Alexandre Urzhumtsev trusts endorse each paper. Same corpus, a different order for every researcher.
- High-resolution structure of a retroviral protease folded as a monomer
- Phaser crystallographic software
- The PyMOL Molecular Graphics System
- Improved Structure Refinement Through Maximum Likelihood
- On the treatment of negative intensity observations
- Improved methods for building protein models in electron density maps and the location of errors in these models.
- International Tables for Crystallography
- Structure validation by Cα geometry: ϕ,ψ and Cβ deviation
- Where freedom is given, liberties are taken.
- The Protein Data Bank: a computer-based archival file for macromolecular structures.
Their papers
- Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix (2019) — 5,538 citations
- Towards automated crystallographic structure refinement with phenix.refine (2012) — 5,021 citations
- Automatic multiple-zone rigid-body refinement with a large convergence radius (2009) — 51 citations
- Programming new geometry restraints: parallelity of atomic groups (2015) — 13 citations
- From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum (2016) — 6 citations
- Bulk-solvent and overall scaling revisited: faster calculations, improved results (2013) — 77 citations
- Metrics for comparison of crystallographic maps (2014) — 26 citations
- On a fast calculation of structure factors at a subatomic resolution. (2004) — 14 citations
- On the use of logarithmic scales for analysis of diffraction data (2009) — 19 citations
- Real-space refinement in PHENIX for cryo-EM and crystallography (2018) — 2,810 citations
- On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps. (2004) — 33 citations
- A program to analyze the distributions of unmeasured reflections (2011) — 8 citations
- From deep TLS validation to ensembles of atomic models built from elemental motions. II. Analysis of TLS refinement results by explicit interpretation (2018) — 8 citations
- New tools for the analysis and validation of cryo-EM maps and atomic models (2018) — 691 citations
- FEM: feature-enhanced map (2014) — 165 citations
- Flat bulk-solvent model: obtaining optimal parameters. (2002) — 30 citations
- A procedure compatible with X-PLOR for the calculation of electron-density maps weighted using an R-free-likelihood approach (1996)
- Bounding a molecule in a noisy synthesis (1989)
- Improvement of protein phases by coarse model modification (1984)