Pavel V. Afonine
Materials Chemistry · 2002–2023
A researcher in the Science corpus: 44 papers; trusts 62 researchers and is trusted by 41 researchers here, as inferred from the citation graph.
Subfields
- Materials Chemistry — 284 citations into it; #342 of 11,513 by trust here, #1,413 by citations
- Molecular Biology — 273 citations into it; #1,237 of 17,773 by trust here, #1,986 by citations
- Computational Biology & Bioinformatics — 131 citations into it; #382 of 660 by trust here, #166 by citations
- Computational Chemistry & Drug Discovery — 63 citations into it
- Structural Biology — 53 citations into it; #95 of 224 by trust here, #19 by citations
- Spectroscopy — 44 citations into it
- Computational Theory and Mathematics — 37 citations into it; #7,118 of 12,182 by trust here, #2,629 by citations
- Surfaces, Coatings and Films — 27 citations into it; #673 of 752 by trust here, #500 by citations
Whom Pavel V. Afonine trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Randy J. Read
- A. Brunger
- R. Grosse-Kunstleve
- G. Sheldrick
- Alexandre Urzhumtsev
- Paul D. Adams
- T. C. Terwilliger
- Vladimir Y. Lunin
- Gerard J. Kleywegt
- Nigel W. Moriarty
Who trusts Pavel V. Afonine overall
- D. Liebschner
- Nigel W. Moriarty
- T. C. Terwilliger
- Paul D. Adams
- T. Croll
- O. Sobolev
- R. Nicholls
- R. Grosse-Kunstleve
- Nathaniel Echols
- G. Bunkoczi
Papers from Pavel V. Afonine's perspective
Ordered by how strongly the researchers Pavel V. Afonine trusts endorse each paper. Same corpus, a different order for every researcher.
- High-resolution structure of a retroviral protease folded as a monomer
- Improved methods for building protein models in electron density maps and the location of errors in these models.
- Phaser crystallographic software
- Accurate Bond and Angle Parameters for X-ray Protein Structure Refinement
- SHELXL: high-resolution refinement.
- International Tables for Crystallography
- The PyMOL Molecular Graphics System
- The Buccaneer software for automated model building. 1. Tracing protein chains.
- The Protein Data Bank.
- A short history of SHELX.
Their papers
- Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix (2019) — 5,538 citations
- Towards automated crystallographic structure refinement with phenix.refine (2012) — 5,021 citations
- Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard (2007) — 450 citations
- Modelling dynamics in protein crystal structures by ensemble refinement (2012) — 255 citations
- phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta (2012) — 135 citations
- Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution (2012) — 232 citations
- Automatic multiple-zone rigid-body refinement with a large convergence radius (2009) — 51 citations
- A robust bulk-solvent correction and anisotropic scaling procedure (2005) — 153 citations
- Flexible torsion-angle noncrystallographic symmetry restraints for improved macromolecular structure refinement (2014) — 26 citations
- Model morphing and sequence assignment after molecular replacement (2013) — 36 citations
- On the application of the expected log-likelihood gain to decision making in molecular replacement (2018) — 24 citations
- Joint X-ray and neutron refinement with phenix.refine. (2010) — 257 citations
- Evaluation of models determined by neutron diffraction and proposed improvements to their validation and deposition (2018) — 13 citations
- Graphical tools for macromolecular crystallography in PHENIX (2012) — 153 citations
- Programming new geometry restraints: parallelity of atomic groups (2015) — 13 citations
- From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum (2016) — 6 citations
- Generalized X-ray and neutron crystallographic analysis: more accurate and complete structures for biological macromolecules (2009) — 122 citations
- Bulk-solvent and overall scaling revisited: faster calculations, improved results (2013) — 77 citations
- Metrics for comparison of crystallographic maps (2014) — 26 citations
- Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). (2019) — 49 citations