Robert M. Dirks
Molecular Biology · 2003–2012
A researcher in the Science corpus: 5 papers; trusts 3 researchers and is trusted by 20 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 53 citations into it; #2,114 of 17,773 by trust here, #6,338 by citations
Whom Robert M. Dirks trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- D. Mathews
- Niles A. Pierce
- Ye Ding
- Tatsuya Akutsu
- Rune B. Lyngsø
- Charles E. Lawrence
- William M. Shih
- Nadrian C. Seeman
Who trusts Robert M. Dirks overall
- David Y. Zhang
- Paul P. Gardner
- Andrew M. Watkins
- Alexander A. Green
- A. Pinheiro
- Justin S. Bois
- Kengo Sato
- Erik Winfree
- Robert Giegerich
- Georg Seelig
Papers from Robert M. Dirks's perspective
Ordered by how strongly the researchers Robert M. Dirks trusts endorse each paper. Same corpus, a different order for every researcher.
- A statistical sampling algorithm for RNA secondary structure prediction. (Nucleic Acids Research)
- RNA Pseudoknot Prediction in Energy-Based Models (J. Comput. Biol.)
- Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization. (RNA: A publication of the RNA Society)
- A partition function algorithm for nucleic acid secondary structure including pseudoknots (Journal of Computational Chemistry)
- Convex analysis and minimization algorithms
- I and i
- statistical-physics-part-1
- Review of 'Numerical Optimization' by Bonnans, Gilbert, Lemaréchal and Sagastizabal
- A deoxyribozyme-based molecular automaton (Nature Biotechnology)
- A 1.7-kilobase single-stranded DNA that folds into a nanoscale octahedron (Nature)
Their papers
- NUPACK: Analysis and design of nucleic acid systems (2011) — 1,650 citations
- Biomolecular simulation: a computational microscope for molecular biology. (2012) — 1,126 citations
- A partition function algorithm for nucleic acid secondary structure including pseudoknots (2003) — 399 citations
- Triggered amplification by hybridization chain reaction. (2004) — 1,050 citations
- Thermodynamic Analysis of Interacting Nucleic Acid Strands (2007) — 372 citations