Erik Winfree
Molecular Biology · 2000–2017
A researcher in the Science corpus: 14 papers; trusts 13 researchers and is trusted by 40 researchers here, as inferred from the citation graph.
Subfields
- Molecular Biology — 86 citations into it; #822 of 17,773 by trust here, #2,739 by citations
- Ecology — 23 citations into it
- Genetics — 9 citations into it
Whom Erik Winfree trusts overall
Their strongest outbound trust, strongest first, inferred from their citations.
- Charles H. Bennett
- Paul Wilhelm Karl Rothemund
- Robert M. Dirks
- David Y. Zhang
- Niles A. Pierce
- Yair Weiss
- Solomon Eyal Shimony
- Daniel T. Gillespie
- Peng Yin
- D. Mathews
Who trusts Erik Winfree overall
- Yaakov Benenson
- David Y. Zhang
- Georg Seelig
- Kevin Kaichuang Yang
- Jinbo Xu
- David Soloveichik
- Yuan-Jyue Chen
- Andrew Leaver-Fay
- Sahand Hormoz
- Kevin Montagne
Papers from Erik Winfree's perspective
Ordered by how strongly the researchers Erik Winfree trusts endorse each paper. Same corpus, a different order for every researcher.
- The thermodynamics of computation—a review
- A statistical sampling algorithm for RNA secondary structure prediction. (Nucleic Acids Research)
- RNA Pseudoknot Prediction in Energy-Based Models (J. Comput. Biol.)
- Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization. (RNA: A publication of the RNA Society)
- A partition function algorithm for nucleic acid secondary structure including pseudoknots (Journal of Computational Chemistry)
- I and i
- Review of 'Numerical Optimization' by Bonnans, Gilbert, Lemaréchal and Sagastizabal
- Algorithmic Self-Assembly of DNA Sierpinski Triangles (PLoS Biology)
- Convex analysis and minimization algorithms
- Logical computation using algorithmic self-assembly of DNA triple-crossover molecules (Nature)
Their papers
- Protein design is NP-hard. (2002) — 284 citations
- Algorithmic Self-Assembly of DNA Sierpinski Triangles (2004) — 852 citations
- Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes (2000) — 614 citations
- Engineering Entropy-Driven Reactions and Networks Catalyzed by DNA (2007) — 1,133 citations
- DNA as a universal substrate for chemical kinetics (2009) — 751 citations
- Neural network computation with DNA strand displacement cascades (2011) — 1,006 citations
- Scaling Up Digital Circuit Computation with DNA Strand Displacement Cascades (2011) — 551 citations
- Computation with finite stochastic chemical reaction networks (2008) — 297 citations
- Molecular Robots Guided by Prescriptive Landscapes (2010) — 854 citations
- Thermodynamic Analysis of Interacting Nucleic Acid Strands (2007) — 372 citations
- Control of DNA strand displacement kinetics using toehold exchange. (2009) — 1,296 citations
- The program-size complexity of self-assembled squares (extended abstract) (2000) — 485 citations
- Self-assembly of carbon nanotubes into two-dimensional geometries using DNA origami templates. (2010) — 601 citations
- Enzyme-free nucleic acid dynamical systems (2017) — 319 citations